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The map label for this gene is ynhG [H]

Identifier: 159184139

GI number: 159184139

Start: 50151

End: 50864

Strand: Reverse

Name: ynhG [H]

Synonym: Atu0048

Alternate gene names: 159184139

Gene position: 50864-50151 (Counterclockwise)

Preceding gene: 15887408

Following gene: 159184137

Centisome position: 1.79

GC content: 61.06

Gene sequence:

>714_bases
ATGCGCATCCGCACCCCATTGACCCTACTCGGTCTGACGGCAGCACTGGCACTGGCCGGCTGCGCCGAAACGACTTCCCA
ATCCTCCGCTCCGACCTCCGGCAAGATCGCGGCGTCAGTGCCGGTTGCTGACCCCGTTCCGGCGAAGGTCGAAACGGTCC
AGATTTTCAACGATGTCTACGGTCCCGTGACCGATGCGGGTTATGCGCTGCCGGCCATTCCGATCAATCGCGTGAATGAG
AAGTACCGCCGCCAGATCGTCGAGTTCCAGACATCCGAGCGTCCCGGCACCATCATCGTCAATACGCGCGATCGTTACCT
CTATTATATCATGTCCGGTAACCGCGCTGTGCGTTACGGCATTGGCGTCGGCAAGGCAGGTTTTGCATGGGCCGGTGAAG
CCTATGTGGCCTGGAAGCAGGAATGGCCGATGTGGCATCCGCCGAAGGAAATGGCCGACCGCAAGCCGGAAGTGGCCAAA
TATGTCGAGGCCGGCATGGGCCCGGGCCTTTCCAACCCGCTCGGCGCGCGCGCCATGTATCTCTTCAACGAAAAGGGACA
GGACACGCTGTTCCGCATCCATGGTTCGCCCGAATGGGCTTCGATCGGCACTGCTGCCTCTTCGGGCTGCATCCGCATGA
TCAACCAGGATGTGATCGATCTCTATAGCCGCGTCCGCCCCGGCCGCAGCACCAAGGTCGTCGTGATCCAGTAA

Upstream 100 bases:

>100_bases
TGCACAATGGCTTGCCAAGTGCGACTTAATGGAAAATAACCGATTTATCCAATTAAGCCTACTCCTTCGCACAATTTGGC
GAATTTTCCGCGAGAACGAC

Downstream 100 bases:

>100_bases
AAGTTACATCAGATCAAGAAAAAGCCGCCGAGGATTTTCCCGGCGGCTTTTTTGTTTATGGAAACGCTAGAGAATTTCCG
GTGAAAACGGGATCACCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRIRTPLTLLGLTAALALAGCAETTSQSSAPTSGKIAASVPVADPVPAKVETVQIFNDVYGPVTDAGYALPAIPINRVNE
KYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNRAVRYGIGVGKAGFAWAGEAYVAWKQEWPMWHPPKEMADRKPEVAK
YVEAGMGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ

Sequences:

>Translated_237_residues
MRIRTPLTLLGLTAALALAGCAETTSQSSAPTSGKIAASVPVADPVPAKVETVQIFNDVYGPVTDAGYALPAIPINRVNE
KYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNRAVRYGIGVGKAGFAWAGEAYVAWKQEWPMWHPPKEMADRKPEVAK
YVEAGMGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ
>Mature_237_residues
MRIRTPLTLLGLTAALALAGCAETTSQSSAPTSGKIAASVPVADPVPAKVETVQIFNDVYGPVTDAGYALPAIPINRVNE
KYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNRAVRYGIGVGKAGFAWAGEAYVAWKQEWPMWHPPKEMADRKPEVAK
YVEAGMGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=35.9712230215827, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787356, Length=144, Percent_Identity=32.6388888888889, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25891; Mature: 25891

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRTPLTLLGLTAALALAGCAETTSQSSAPTSGKIAASVPVADPVPAKVETVQIFNDVY
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHC
GPVTDAGYALPAIPINRVNEKYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNRAVRYG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEE
IGVGKAGFAWAGEAYVAWKQEWPMWHPPKEMADRKPEVAKYVEAGMGPGLSNPLGARAMY
CCCCCCCCEECCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEE
LFNEKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ
EECCCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MRIRTPLTLLGLTAALALAGCAETTSQSSAPTSGKIAASVPVADPVPAKVETVQIFNDVY
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHC
GPVTDAGYALPAIPINRVNEKYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNRAVRYG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEE
IGVGKAGFAWAGEAYVAWKQEWPMWHPPKEMADRKPEVAKYVEAGMGPGLSNPLGARAMY
CCCCCCCCEECCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEE
LFNEKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ
EECCCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]