| Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
|---|---|
| Accession | NC_009957 |
| Length | 126,304 |
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The map label for this gene is 159046569
Identifier: 159046569
GI number: 159046569
Start: 96285
End: 97403
Strand: Direct
Name: 159046569
Synonym: Dshi_4031
Alternate gene names: NA
Gene position: 96285-97403 (Clockwise)
Preceding gene: 159046568
Following gene: 159046571
Centisome position: 76.23
GC content: 58.71
Gene sequence:
>1119_bases ATGGCATGGAACTGGCAGATATCCGGTTGGCCGGAATTCCGGTATGACGAGGCCGCACTGGCACCGCTTGAGCAGCGATT TTTGCTGTCCTCAGGCGAAGTCCTTGGTGCCGTCCACCATGTGAACCCGTCCGAGCGTGATCAACTCCGCATCGATCTGC TGAGCGATGAAGCGATGAAGACCAGTGCCATCGAGGGCGAGATGCTGGACCGGCGCAGCGTGCAATCCTCACTTCGCCGG CACCTTGGATTAGAGCCTGACAGCTATCCGAACAAACCTCGCGAGCAGGGGGTGGCTGAGATGATGGTCGATGTTTACTC GACCTATGCCGAGCCCCTTGCGCACGGCACCCTGTTTCGGTGGCATGAGATGCTCTTGGCCTTCGACAAGCGCCTGGAGG CGATCGGTTCATACCGGCAGCACGAGGATGCCATGCAGATCGTCTCTGGCCGTTTTGATCGTCCGGTCGTGCATTTTGAG GCGCCGCCATCTGTGCAGGTTCCGGAAGAGATGGACCGGTATGTCGACTGGTTCAATCGGACCGAGCCGGGTGCCGAGGA GCCCTTGCCAGCGTTGACGCGTGCGGGCCTGAGTCATCTCTACTTCGAAAGTATCCACCCATTTGAGGACGGGAATGGTC GCCTGGGTCGGGCCTTGGCCGAAAAGTCCCTGGCTCAGAGTATCGGCCAGCCCAGCCTGATCGCGCTGGCTTTCACCCTC GAGCGAAAGCGAAAGGACTATTACGATCAGCTCGAGCGACACCAGAAGACGCTGGAGGTCACGCCTTGGCTGGTATGGTT TGCAAAGTCCGTTCTTGAAGCGCAGCAGGTCACCCTGGGCCGCGTGGGCTTCTTCATTGCCAAGGCGCATTTCTATGGCC GGCATCGTGATCAACTGAACGAACGGCAAGCCAAGGTGATCGAGCGGATGTTCCGGGAGGGACCAGATGGCTTCAAGGGT GGTTTGAGCGCCGAGAACTATATTTCGATCACCGGTATATCGCGCGCGACTGCTACAAGGGATCTACAAGAACTTGTCGA GATTGGTGCCCTCACGCGCACTGGCGAACGCCGATACACGCGTTACTGGCTGAAGTCACTTGCCGGGATCATAGCCTAG
Upstream 100 bases:
>100_bases TCTTTGCCTGAACGATGTCGAGAAATCGTGAGGTATAGAATTGACTTCTATACCTCAAAAATGATCTATTCATGCGTTAT AAAAAAGGGCTCTATAACTC
Downstream 100 bases:
>100_bases CGCAGCCATAGAACGCGTCGGTTGTCTGATGTTCGAGGCAGATGCACTGTTCCTGCTATCCATTCCGCCCTAGTTTTTGA GTCTTGTACGACAACTCGAA
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: Fic Family Protein; Xin-Antitoxin System Toxin Component Fic Family; Filamentation Induced By Camp Protein Fic; Cell Filamentation Protein; Fic Protein Family; Filamentation Induced By CAMP Protein Family Protein; Fic Protein; -Like Protein; Homolog; Transcription Regulator
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MAWNWQISGWPEFRYDEAALAPLEQRFLLSSGEVLGAVHHVNPSERDQLRIDLLSDEAMKTSAIEGEMLDRRSVQSSLRR HLGLEPDSYPNKPREQGVAEMMVDVYSTYAEPLAHGTLFRWHEMLLAFDKRLEAIGSYRQHEDAMQIVSGRFDRPVVHFE APPSVQVPEEMDRYVDWFNRTEPGAEEPLPALTRAGLSHLYFESIHPFEDGNGRLGRALAEKSLAQSIGQPSLIALAFTL ERKRKDYYDQLERHQKTLEVTPWLVWFAKSVLEAQQVTLGRVGFFIAKAHFYGRHRDQLNERQAKVIERMFREGPDGFKG GLSAENYISITGISRATATRDLQELVEIGALTRTGERRYTRYWLKSLAGIIA
Sequences:
>Translated_372_residues MAWNWQISGWPEFRYDEAALAPLEQRFLLSSGEVLGAVHHVNPSERDQLRIDLLSDEAMKTSAIEGEMLDRRSVQSSLRR HLGLEPDSYPNKPREQGVAEMMVDVYSTYAEPLAHGTLFRWHEMLLAFDKRLEAIGSYRQHEDAMQIVSGRFDRPVVHFE APPSVQVPEEMDRYVDWFNRTEPGAEEPLPALTRAGLSHLYFESIHPFEDGNGRLGRALAEKSLAQSIGQPSLIALAFTL ERKRKDYYDQLERHQKTLEVTPWLVWFAKSVLEAQQVTLGRVGFFIAKAHFYGRHRDQLNERQAKVIERMFREGPDGFKG GLSAENYISITGISRATATRDLQELVEIGALTRTGERRYTRYWLKSLAGIIA >Mature_371_residues AWNWQISGWPEFRYDEAALAPLEQRFLLSSGEVLGAVHHVNPSERDQLRIDLLSDEAMKTSAIEGEMLDRRSVQSSLRRH LGLEPDSYPNKPREQGVAEMMVDVYSTYAEPLAHGTLFRWHEMLLAFDKRLEAIGSYRQHEDAMQIVSGRFDRPVVHFEA PPSVQVPEEMDRYVDWFNRTEPGAEEPLPALTRAGLSHLYFESIHPFEDGNGRLGRALAEKSLAQSIGQPSLIALAFTLE RKRKDYYDQLERHQKTLEVTPWLVWFAKSVLEAQQVTLGRVGFFIAKAHFYGRHRDQLNERQAKVIERMFREGPDGFKGG LSAENYISITGISRATATRDLQELVEIGALTRTGERRYTRYWLKSLAGIIA
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42617; Mature: 42486
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWNWQISGWPEFRYDEAALAPLEQRFLLSSGEVLGAVHHVNPSERDQLRIDLLSDEAMK CCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCCHHEEEEECCCHHHH TSAIEGEMLDRRSVQSSLRRHLGLEPDSYPNKPREQGVAEMMVDVYSTYAEPLAHGTLFR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH WHEMLLAFDKRLEAIGSYRQHEDAMQIVSGRFDRPVVHFEAPPSVQVPEEMDRYVDWFNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC TEPGAEEPLPALTRAGLSHLYFESIHPFEDGNGRLGRALAEKSLAQSIGQPSLIALAFTL CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH ERKRKDYYDQLERHQKTLEVTPWLVWFAKSVLEAQQVTLGRVGFFIAKAHFYGRHRDQLN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH ERQAKVIERMFREGPDGFKGGLSAENYISITGISRATATRDLQELVEIGALTRTGERRYT HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHH RYWLKSLAGIIA HHHHHHHHHHCC >Mature Secondary Structure AWNWQISGWPEFRYDEAALAPLEQRFLLSSGEVLGAVHHVNPSERDQLRIDLLSDEAMK CEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCCHHEEEEECCCHHHH TSAIEGEMLDRRSVQSSLRRHLGLEPDSYPNKPREQGVAEMMVDVYSTYAEPLAHGTLFR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH WHEMLLAFDKRLEAIGSYRQHEDAMQIVSGRFDRPVVHFEAPPSVQVPEEMDRYVDWFNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC TEPGAEEPLPALTRAGLSHLYFESIHPFEDGNGRLGRALAEKSLAQSIGQPSLIALAFTL CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH ERKRKDYYDQLERHQKTLEVTPWLVWFAKSVLEAQQVTLGRVGFFIAKAHFYGRHRDQLN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH ERQAKVIERMFREGPDGFKGGLSAENYISITGISRATATRDLQELVEIGALTRTGERRYT HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHH RYWLKSLAGIIA HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA