Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
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Accession | NC_009957 |
Length | 126,304 |
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The map label for this gene is 159046548
Identifier: 159046548
GI number: 159046548
Start: 78320
End: 79039
Strand: Direct
Name: 159046548
Synonym: Dshi_4010
Alternate gene names: NA
Gene position: 78320-79039 (Clockwise)
Preceding gene: 159046544
Following gene: 159046558
Centisome position: 62.01
GC content: 58.47
Gene sequence:
>720_bases ATGAAAGCCCAAATTCTCAAGACACTCGCCGCTTTGGCCTTGATCACGACATCTGCAGCCGCACAGGAAACCCCAATGGA AAATCACACTGCCAGCTACATCGCCATGCCCGCCGCTGAAGGCCAGACCGAAGCATTCGCCGAATTTCTGGCCGGAGCCG CCCCGATTGTCGCGGACACCGAACCAGGCACCGTGCTTTGGTTTGCCTTACAAGACGACGATACGCTCGCGATCTTTGAT ATCTTCGTGGATGAAGAAGCGCGCAATGCGCATTTCTCCGGCGCTGTGGCCGCGGCTTTGAACCAAAATGCCGACGCGCT GGTCGCCGGGGGCTGGGACGATGGTGTTGTCGCGAATATCAACAATTCCGATGTCCTGTCGGTGAGGGAACCGGTTGATC TCTACTCGGCCACGACAGCCACGTACATCACGCTCGAAGCAGCACCCGGCAGAGGGCCGGAATTGGCAGCCTTGCTGACC GCAGCTGGTCCCATCGTCGGAGAAACCGAACCCGGCACATTGTTCTGGGCGGCGCTGCAGATTGACGAAACATCCTTCGC AATCTTCGACATCTTCACCAACAATGCTGGCCGTGAAGCACACTTTGCCGGTCAAGTCGCCGGGCTGCTGAACGAACGGG CAGCTGAGTTGGTCGCTGGCGGGTGGGACGACGGTGTGGTCGCTAACGTCCACAACTTCGACATCCTCGCCATCAAGTAA
Upstream 100 bases:
>100_bases TATCAAAGAATAGAAGTTCGGGATTGGTGCCTGAGGCATTCGGCATGAGAAAAGGGTGCATCGAAACCAAACACAACAAC CTATCAATCAGGAGGCGACC
Downstream 100 bases:
>100_bases CGAGATGTGACAGGAACAAGAGGCGCCTGGTGCAACGCATCAGGCGCTTTGCCGAACGAATTTAGATTCACCGTGAAGCG GCCGTTCGAGTAACTGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK
Sequences:
>Translated_239_residues MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK >Mature_239_residues MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24902; Mature: 24902
Theoretical pI: Translated: 3.78; Mature: 3.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADT CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECC EPGTVLWFALQDDDTLAIFDIFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANI CCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEC NNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLTAAGPIVGETEPGTLFWAALQ CCCCEEEECCCCHHHCCCEEEEEEEECCCCCCCHHHHEEHHCCCCCCCCCCCEEEEEEEE IDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK ECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEC >Mature Secondary Structure MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADT CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECC EPGTVLWFALQDDDTLAIFDIFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANI CCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEC NNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLTAAGPIVGETEPGTLFWAALQ CCCCEEEECCCCHHHCCCEEEEEEEECCCCCCCHHHHEEHHCCCCCCCCCCCEEEEEEEE IDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK ECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA