Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

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The map label for this gene is 159046548

Identifier: 159046548

GI number: 159046548

Start: 78320

End: 79039

Strand: Direct

Name: 159046548

Synonym: Dshi_4010

Alternate gene names: NA

Gene position: 78320-79039 (Clockwise)

Preceding gene: 159046544

Following gene: 159046558

Centisome position: 62.01

GC content: 58.47

Gene sequence:

>720_bases
ATGAAAGCCCAAATTCTCAAGACACTCGCCGCTTTGGCCTTGATCACGACATCTGCAGCCGCACAGGAAACCCCAATGGA
AAATCACACTGCCAGCTACATCGCCATGCCCGCCGCTGAAGGCCAGACCGAAGCATTCGCCGAATTTCTGGCCGGAGCCG
CCCCGATTGTCGCGGACACCGAACCAGGCACCGTGCTTTGGTTTGCCTTACAAGACGACGATACGCTCGCGATCTTTGAT
ATCTTCGTGGATGAAGAAGCGCGCAATGCGCATTTCTCCGGCGCTGTGGCCGCGGCTTTGAACCAAAATGCCGACGCGCT
GGTCGCCGGGGGCTGGGACGATGGTGTTGTCGCGAATATCAACAATTCCGATGTCCTGTCGGTGAGGGAACCGGTTGATC
TCTACTCGGCCACGACAGCCACGTACATCACGCTCGAAGCAGCACCCGGCAGAGGGCCGGAATTGGCAGCCTTGCTGACC
GCAGCTGGTCCCATCGTCGGAGAAACCGAACCCGGCACATTGTTCTGGGCGGCGCTGCAGATTGACGAAACATCCTTCGC
AATCTTCGACATCTTCACCAACAATGCTGGCCGTGAAGCACACTTTGCCGGTCAAGTCGCCGGGCTGCTGAACGAACGGG
CAGCTGAGTTGGTCGCTGGCGGGTGGGACGACGGTGTGGTCGCTAACGTCCACAACTTCGACATCCTCGCCATCAAGTAA

Upstream 100 bases:

>100_bases
TATCAAAGAATAGAAGTTCGGGATTGGTGCCTGAGGCATTCGGCATGAGAAAAGGGTGCATCGAAACCAAACACAACAAC
CTATCAATCAGGAGGCGACC

Downstream 100 bases:

>100_bases
CGAGATGTGACAGGAACAAGAGGCGCCTGGTGCAACGCATCAGGCGCTTTGCCGAACGAATTTAGATTCACCGTGAAGCG
GCCGTTCGAGTAACTGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD
IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT
AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK

Sequences:

>Translated_239_residues
MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD
IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT
AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK
>Mature_239_residues
MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADTEPGTVLWFALQDDDTLAIFD
IFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANINNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLT
AAGPIVGETEPGTLFWAALQIDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24902; Mature: 24902

Theoretical pI: Translated: 3.78; Mature: 3.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADT
CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECC
EPGTVLWFALQDDDTLAIFDIFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANI
CCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEC
NNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLTAAGPIVGETEPGTLFWAALQ
CCCCEEEECCCCHHHCCCEEEEEEEECCCCCCCHHHHEEHHCCCCCCCCCCCEEEEEEEE
IDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK
ECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEC
>Mature Secondary Structure
MKAQILKTLAALALITTSAAAQETPMENHTASYIAMPAAEGQTEAFAEFLAGAAPIVADT
CCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECC
EPGTVLWFALQDDDTLAIFDIFVDEEARNAHFSGAVAAALNQNADALVAGGWDDGVVANI
CCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEC
NNSDVLSVREPVDLYSATTATYITLEAAPGRGPELAALLTAAGPIVGETEPGTLFWAALQ
CCCCEEEECCCCHHHCCCEEEEEEEECCCCCCCHHHHEEHHCCCCCCCCCCCEEEEEEEE
IDETSFAIFDIFTNNAGREAHFAGQVAGLLNERAAELVAGGWDDGVVANVHNFDILAIK
ECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA