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The map label for this gene is asnC [C]

Identifier: 15899103

GI number: 15899103

Start: 2142445

End: 2142906

Strand: Reverse

Name: asnC [C]

Synonym: SSO2347

Alternate gene names: 15899103

Gene position: 2142906-2142445 (Counterclockwise)

Preceding gene: 15899104

Following gene: 15899098

Centisome position: 71.62

GC content: 31.6

Gene sequence:

>462_bases
TTGAATTCCTCATTTTACTATCTTGACGATATTGATAAAAAGATACTTAATATACTACAACAAGATTCACGAATACCTTT
CTCAAGGCTAGCCAAGATGCTTAATTTAAGCGAGGCTACAATATATGTCAGAATAAAGAGATTAAAAGAAAATGGTGTGA
TTAAGGGTTTTTATACTGAAATAGATTTCGATAAGATAGGGCTCAGTGTTGTAGCTTTCATATTAATAAAAGCTGATCCT
AAGAAATACGATAATATACTAAAACAATTAGTGGAAATGAAAGAAATCTACGAAATTTATGATGTAACTGGAGAATATTA
TGCGGTACTGAAAGTGAGAGTACCGACTAGAGAAGATTTAGCAAAAGTTTTAGATAAGATAGGAAATATGGATGGAGTCA
CCTCGACGTATACAATGCTTGTACTTAGATCAATAAAGGACAAGAAAGAGCTCGATCTTTAA

Upstream 100 bases:

>100_bases
CGAAGGCTCTTCTTAACAATGATCCTCAACTAATTTTAAAATTTGCTATAGGCGAATTTAATAGAGTTGATTTAATAAAG
ATCTTTGGGAGGTCTCTTAT

Downstream 100 bases:

>100_bases
ATCAGGAGCGAGAGCTCTTCATCACATTTCAGACGGTTTTCTATTCCTCATCTCCTAATCTTTTCTATTAAATGCGTGAC
AATATATTTAGCTGGATTAA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNSSFYYLDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIGLSVVAFILIKADP
KKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKIGNMDGVTSTYTMLVLRSIKDKKELDL

Sequences:

>Translated_153_residues
MNSSFYYLDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIGLSVVAFILIKADP
KKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKIGNMDGVTSTYTMLVLRSIKDKKELDL
>Mature_153_residues
MNSSFYYLDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIGLSVVAFILIKADP
KKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKIGNMDGVTSTYTMLVLRSIKDKKELDL

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=141, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87081742, Length=139, Percent_Identity=31.6546762589928, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=30.4054054054054, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17786; Mature: 17786

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSFYYLDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTE
CCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHEEEHHCCCCEEEEEEE
IDFDKIGLSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDL
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
AKVLDKIGNMDGVTSTYTMLVLRSIKDKKELDL
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MNSSFYYLDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTE
CCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHEEEHHCCCCEEEEEEE
IDFDKIGLSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDL
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
AKVLDKIGNMDGVTSTYTMLVLRSIKDKKELDL
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA