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The map label for this gene is rfbD-3

Identifier: 15898942

GI number: 15898942

Start: 1986061

End: 1986828

Strand: Reverse

Name: rfbD-3

Synonym: SSO2161

Alternate gene names: NA

Gene position: 1986828-1986061 (Counterclockwise)

Preceding gene: 15898943

Following gene: 15898941

Centisome position: 66.4

GC content: 33.2

Gene sequence:

>768_bases
TTGAAAATTGCAGTTACTGATGAAGGAGAAGTTGCTAAAGCAATTGCCAAATTTCTTGGTGGTAAAGGCAATGAAATTAT
AGTTGTGGATAATCCCTCCAAGGTTATAAGGGAAAAACCAGATGTGATAATACATACATTTGAAATACCAATTTTTGAAA
GTAACGCAAATCCTCCTTTAGCCTGGTCATTTAACACGTGGTACGCAATTAACATAGCTAGAGCTGGGTCTAAGGCGGGG
AGCGTAAATGTATTTCTTTCCTCTTTTTTAATTTACGATGGGAAGAGAGGTTTTTACAAAGAACATAATACTCCTCATCC
ACTAAATTATTACGGATTAACTAAACTAGTGGGGGAGAGTAGTATTATCTCTTTGGGTAATTACTTAGTTTTAAGAGTTG
GCGCATTATTTTCATTATCATATAGGGGTTTTCTATTTCCATTCATTAAAGCCTCCACAATGGGGAAAGTCCTAAAGTGT
AATAAAAACTTTTATATCTCAATTATCGATTTAAATACATTAGCTAAGGTAATTAAATTACTTATTGATAAGGAAGCAAG
AGGAGTAATAAACGTAGGGAGCAATAGAGTATCTCTTTTTGACATATGTAGTTACCTTTCAGATATCTTTGGAAATGAAG
TTATTGAAATTGATAATCGACAGAGGGATTTTTCGCTAGATGATTGGCTTTTAAGAGCATATAATATTAAAATCGACGCA
AAAGAGAGTATATTGAGCTTAATTGAGTACAGACTTCTTAACAACTAG

Upstream 100 bases:

>100_bases
GATAAGCAAAATCTTGAGCTAGAGCAATTTTTTAACGTACTCGTATAATGATATATAGTAATCGAAACTTTTTAATTCTA
GGTAGTAAGAATTATAGATA

Downstream 100 bases:

>100_bases
GGAAAAAATATTCTTGTTGTTATTTTATTCAGATGAACCTTTGAGTGCTAGGGAGATAATGAGAAGATTGGACGTTAGGA
AAGAGAAAGAAGTTTACGAT

Product: dTDP-4-dehydrorhamnose reductase (rfbD-3)

Products: dTDP-4-dehydro-6-deoxy-L-mannose; NADPH; H+

Alternate protein names: Dtdp-4-Dehydrorhamnose Reductase

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKIAVTDEGEVAKAIAKFLGGKGNEIIVVDNPSKVIREKPDVIIHTFEIPIFESNANPPLAWSFNTWYAINIARAGSKAG
SVNVFLSSFLIYDGKRGFYKEHNTPHPLNYYGLTKLVGESSIISLGNYLVLRVGALFSLSYRGFLFPFIKASTMGKVLKC
NKNFYISIIDLNTLAKVIKLLIDKEARGVINVGSNRVSLFDICSYLSDIFGNEVIEIDNRQRDFSLDDWLLRAYNIKIDA
KESILSLIEYRLLNN

Sequences:

>Translated_255_residues
MKIAVTDEGEVAKAIAKFLGGKGNEIIVVDNPSKVIREKPDVIIHTFEIPIFESNANPPLAWSFNTWYAINIARAGSKAG
SVNVFLSSFLIYDGKRGFYKEHNTPHPLNYYGLTKLVGESSIISLGNYLVLRVGALFSLSYRGFLFPFIKASTMGKVLKC
NKNFYISIIDLNTLAKVIKLLIDKEARGVINVGSNRVSLFDICSYLSDIFGNEVIEIDNRQRDFSLDDWLLRAYNIKIDA
KESILSLIEYRLLNN
>Mature_255_residues
MKIAVTDEGEVAKAIAKFLGGKGNEIIVVDNPSKVIREKPDVIIHTFEIPIFESNANPPLAWSFNTWYAINIARAGSKAG
SVNVFLSSFLIYDGKRGFYKEHNTPHPLNYYGLTKLVGESSIISLGNYLVLRVGALFSLSYRGFLFPFIKASTMGKVLKC
NKNFYISIIDLNTLAKVIKLLIDKEARGVINVGSNRVSLFDICSYLSDIFGNEVIEIDNRQRDFSLDDWLLRAYNIKIDA
KESILSLIEYRLLNN

Specific function: Unknown

COG id: COG1091

COG function: function code M; dTDP-4-dehydrorhamnose reductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.1.1.133

Molecular weight: Translated: 28641; Mature: 28641

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAVTDEGEVAKAIAKFLGGKGNEIIVVDNPSKVIREKPDVIIHTFEIPIFESNANPPL
CEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCCCE
AWSFNTWYAINIARAGSKAGSVNVFLSSFLIYDGKRGFYKEHNTPHPLNYYGLTKLVGES
EEECCCEEEEEEEECCCCCCCHHHEEEEHHEECCCCCCCCCCCCCCCCCHHHHHHHHCCC
SIISLGNYLVLRVGALFSLSYRGFLFPFIKASTMGKVLKCNKNFYISIIDLNTLAKVIKL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHHH
LIDKEARGVINVGSNRVSLFDICSYLSDIFGNEVIEIDNRQRDFSLDDWLLRAYNIKIDA
HHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHEEEEEEEEEEC
KESILSLIEYRLLNN
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIAVTDEGEVAKAIAKFLGGKGNEIIVVDNPSKVIREKPDVIIHTFEIPIFESNANPPL
CEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCCCE
AWSFNTWYAINIARAGSKAGSVNVFLSSFLIYDGKRGFYKEHNTPHPLNYYGLTKLVGES
EEECCCEEEEEEEECCCCCCCHHHEEEEHHEECCCCCCCCCCCCCCCCCHHHHHHHHCCC
SIISLGNYLVLRVGALFSLSYRGFLFPFIKASTMGKVLKCNKNFYISIIDLNTLAKVIKL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEEEEHHHHHHHHHH
LIDKEARGVINVGSNRVSLFDICSYLSDIFGNEVIEIDNRQRDFSLDDWLLRAYNIKIDA
HHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHEEEEEEEEEEC
KESILSLIEYRLLNN
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-6-deoxy-L-mannose; NADP+

Specific reaction: dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA