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The map label for this gene is ywrC [H]

Identifier: 15898915

GI number: 15898915

Start: 1958425

End: 1958892

Strand: Reverse

Name: ywrC [H]

Synonym: SSO2131

Alternate gene names: 15898915

Gene position: 1958892-1958425 (Counterclockwise)

Preceding gene: 15898916

Following gene: 15898906

Centisome position: 65.47

GC content: 34.4

Gene sequence:

>468_bases
ATGATGGGAGTAAATATAATAAGACTTGATGATACTGATGAGAAAATTCTTAACATTTTGCGCTATAATGCTAAAAAGAG
TTTAAAGGAGCTATCCGATGAGCTCGGAATACCAATAAGTACAGTAAGGTATAGGATTAAGAGATTGGAAGATGCGCAAA
TAATAAGAGGGTATGTCGCCTTAATAGACAGAGTAAATTTAGGTTTGAATGTCTCATTAGTAATGGAAATAGAGACAGTA
CCATACTCCATAAAGAAGGTAGCCCAAGACCTAGGTGAAATACCGGAAGTAGTGAGGATATACGGTTTAGATAATGGGCC
TAGATTACATGTACATATGATCTTTAAAGATGATGCAAGCGCACATCAATTTATAGCCAATAAATTGTACAATATTAAGG
GAATCAAGACTGTTTCGATTTCAAGGATAATTGAGAGATATAAGATAGATCCTTCAGTACTGTTATGA

Upstream 100 bases:

>100_bases
CAAACAAAGCGATATAAAACTTCATTTTATGCAATATAAAAAGGCATTATCTTGTAATTTTTACAATAATCCTTTTATGT
TTGATAATGTATAATGTATA

Downstream 100 bases:

>100_bases
GTACATCAATATAAATTTCCAAAAATAGGAAAAAAGAAAAGATATTTTTCTTTATTTATCACTTATCTTCGCATTTATTG
ACTTTATTGGCATTACCCCA

Product: Lrp/AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MMGVNIIRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLGLNVSLVMEIETV
PYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANKLYNIKGIKTVSISRIIERYKIDPSVLL

Sequences:

>Translated_155_residues
MMGVNIIRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLGLNVSLVMEIETV
PYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANKLYNIKGIKTVSISRIIERYKIDPSVLL
>Mature_155_residues
MMGVNIIRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVALIDRVNLGLNVSLVMEIETV
PYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDASAHQFIANKLYNIKGIKTVSISRIIERYKIDPSVLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013199
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08280 HTH_Mga [H]

EC number: NA

Molecular weight: Translated: 17702; Mature: 17702

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGVNIIRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVA
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
LIDRVNLGLNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDAS
HHHHHCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEECCCH
AHQFIANKLYNIKGIKTVSISRIIERYKIDPSVLL
HHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMGVNIIRLDDTDEKILNILRYNAKKSLKELSDELGIPISTVRYRIKRLEDAQIIRGYVA
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
LIDRVNLGLNVSLVMEIETVPYSIKKVAQDLGEIPEVVRIYGLDNGPRLHVHMIFKDDAS
HHHHHCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEECCCH
AHQFIANKLYNIKGIKTVSISRIIERYKIDPSVLL
HHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]