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The map label for this gene is yrkH [H]

Identifier: 15898859

GI number: 15898859

Start: 1889747

End: 1890490

Strand: Reverse

Name: yrkH [H]

Synonym: SSO2072

Alternate gene names: 15898859

Gene position: 1890490-1889747 (Counterclockwise)

Preceding gene: 15898860

Following gene: 15898858

Centisome position: 63.18

GC content: 36.16

Gene sequence:

>744_bases
TTGATGATATTCAGGCAGATTATAAGCAAAAGTGGCGGTTGCGCTACTTACGTTTTCGGTTGCACTCAAGCTGGAGAGTT
GTTTGTAGTGGATCCTAAGTATGAAATGGTAGATGAAATTATTGAGCTTGCCCGAGATTTAGGGGATATGAAAATAGCTT
ATATAATAGATACACACACTCATGCTGATCACCTATCTGGTGCTAAGAAATTGGCGTCTTTAACTAATGCTAACGTTTAC
TATCATGAGTTATCGCAGGTCAAATTCAAGGTGGAAAGGGTTAAGAATGGAGAGGAAATAAAGGCTGGAAATGTTAAAAT
AAAGGTACTTCATACTCCCGGACATACTCCAGATAGTATTTCAGTTCTAATATATGATAGAAGAAGAGACGAAAGTTGGA
ATGAACCGTGGGCTATATTAACTGGGGACACATTATTTGTGGGTGGTCTGGGAAGAATTGATATAGGCGGGGAAAACGCA
GAGGAGAATTTATACTACAGTCTAGCTAAACTAAAAGAATTGCCTGACTATGTTGAAATTTATCCAGCACATACTGCTGG
TTCAGTATGTGGTATTGGTATAAGCGGAAAACCTAGTTCTACAATAGGTTTTGAAAAGAGATTCAATAGTTTATTTAGAA
TAAACAATAAAGATGAATTCGTAAATAGAATTAGAGAAGTTAAAATGCCTAAGCCTAAGGAATTTGATGATTACATAAGG
AAGAATTTAGAAGGTGTGATTTAA

Upstream 100 bases:

>100_bases
GACTCTTGTAGAGGATGTGTACTTCAAGCAGAAGAGCACTTTGATCTATTAACTTATAAGAGTGAATAACTCTTATATCT
AATTACTTATTTAAAGTAAA

Downstream 100 bases:

>100_bases
GAAAAAAGAGATGATGCTTAGTTGATCTGTTGAATTTTTTCCGATGAGCTAGTATTATCTCTTCCTTTCAACTAATGATT
ATATATTCAATTTAGATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMIFRQIISKSGGCATYVFGCTQAGELFVVDPKYEMVDEIIELARDLGDMKIAYIIDTHTHADHLSGAKKLASLTNANVY
YHELSQVKFKVERVKNGEEIKAGNVKIKVLHTPGHTPDSISVLIYDRRRDESWNEPWAILTGDTLFVGGLGRIDIGGENA
EENLYYSLAKLKELPDYVEIYPAHTAGSVCGIGISGKPSSTIGFEKRFNSLFRINNKDEFVNRIREVKMPKPKEFDDYIR
KNLEGVI

Sequences:

>Translated_247_residues
MMIFRQIISKSGGCATYVFGCTQAGELFVVDPKYEMVDEIIELARDLGDMKIAYIIDTHTHADHLSGAKKLASLTNANVY
YHELSQVKFKVERVKNGEEIKAGNVKIKVLHTPGHTPDSISVLIYDRRRDESWNEPWAILTGDTLFVGGLGRIDIGGENA
EENLYYSLAKLKELPDYVEIYPAHTAGSVCGIGISGKPSSTIGFEKRFNSLFRINNKDEFVNRIREVKMPKPKEFDDYIR
KNLEGVI
>Mature_247_residues
MMIFRQIISKSGGCATYVFGCTQAGELFVVDPKYEMVDEIIELARDLGDMKIAYIIDTHTHADHLSGAKKLASLTNANVY
YHELSQVKFKVERVKNGEEIKAGNVKIKVLHTPGHTPDSISVLIYDRRRDESWNEPWAILTGDTLFVGGLGRIDIGGENA
EENLYYSLAKLKELPDYVEIYPAHTAGSVCGIGISGKPSSTIGFEKRFNSLFRINNKDEFVNRIREVKMPKPKEFDDYIR
KNLEGVI

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI41327741, Length=244, Percent_Identity=27.0491803278689, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI46361987, Length=135, Percent_Identity=28.1481481481481, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI94538322, Length=159, Percent_Identity=29.559748427673, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI14150041, Length=135, Percent_Identity=28.1481481481481, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI94538320, Length=162, Percent_Identity=29.0123456790123, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787158, Length=215, Percent_Identity=28.3720930232558, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17538952, Length=241, Percent_Identity=27.3858921161826, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI221330176, Length=244, Percent_Identity=30.327868852459, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 27806; Mature: 27806

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIFRQIISKSGGCATYVFGCTQAGELFVVDPKYEMVDEIIELARDLGDMKIAYIIDTHT
CHHHHHHHCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCC
HADHLSGAKKLASLTNANVYYHELSQVKFKVERVKNGEEIKAGNVKIKVLHTPGHTPDSI
CHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCE
SVLIYDRRRDESWNEPWAILTGDTLFVGGLGRIDIGGENAEENLYYSLAKLKELPDYVEI
EEEEEECCCCCCCCCCEEEEECCEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHEE
YPAHTAGSVCGIGISGKPSSTIGFEKRFNSLFRINNKDEFVNRIREVKMPKPKEFDDYIR
EECCCCCCEEEECCCCCCCCCCCHHHHHHHHEEECCHHHHHHHHHHCCCCCCCCHHHHHH
KNLEGVI
HHHCCCC
>Mature Secondary Structure
MMIFRQIISKSGGCATYVFGCTQAGELFVVDPKYEMVDEIIELARDLGDMKIAYIIDTHT
CHHHHHHHCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCC
HADHLSGAKKLASLTNANVYYHELSQVKFKVERVKNGEEIKAGNVKIKVLHTPGHTPDSI
CHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCE
SVLIYDRRRDESWNEPWAILTGDTLFVGGLGRIDIGGENAEENLYYSLAKLKELPDYVEI
EEEEEECCCCCCCCCCEEEEECCEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHEE
YPAHTAGSVCGIGISGKPSSTIGFEKRFNSLFRINNKDEFVNRIREVKMPKPKEFDDYIR
EECCCCCCEEEECCCCCCCCCCCHHHHHHHHEEECCHHHHHHHHHHCCCCCCCCHHHHHH
KNLEGVI
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]