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The map label for this gene is ygiD [H]

Identifier: 15898711

GI number: 15898711

Start: 1731989

End: 1732768

Strand: Reverse

Name: ygiD [H]

Synonym: SSO1913

Alternate gene names: 15898711

Gene position: 1732768-1731989 (Counterclockwise)

Preceding gene: 15898712

Following gene: 15898710

Centisome position: 57.91

GC content: 35.64

Gene sequence:

>780_bases
ATGATGATGACAGTTGGGTTATTTATATCTCATGGTTCCCCTACTATCCTTACTGAGGAAAATAAGTGGAAGGATCTACT
CAGAAATATAGGAAAGGATGTTATGGAAAAATATAAGCCAGATACAATAATCGTATCTAGTCCTCATTTTATATCATGGT
CTGGGGATTATTATATAGAAAACAGTGAGAAATTAGAGTGTATACAAGACTATTACGGTTTCCCAGAAGAGACCTACAAA
TATTGTTATGAGGCATATAATGATGTAGAACTAGTAAACGAAATTGTAATGGCTTCCGATGGAATCATAAAAGAGGATAA
CAGATGGGGTTTAGATCATGGTGCGTGGATTCCCCTTTTATTCATGTTTCCCGAGTATAAGCCAAAAGTAGTAACAATAT
CCATTACCGACAATAGCCCAGAATCACACTATGCTATAGGTGAAAAGATTAGAAACGCGGTAGAGAAATTAGGAAGAAAA
GTATTATTCCTAGCTACAGGTTCACCAACTCACAGACTAGACCTATTCTACTTCAAGATAACTCCTAAACCTACAAACTT
CGATATCATACTAATGGATATGATAAAATCTGGCGAATTTGACAAAATATTAAGAATTAACGAGCTATATCCTAAGGAAT
ATCAAACTGCTATGCCTGAAGGAAATTTAAACACTCTATACATACTCTTAGGGTTTGTTAAACCGAAGAGGGCTGAGATT
TTAGGATATGACACACCTTGGCCCGGAGTTAGTATGTTAGCCGCAAGCTTTTATGATTAA

Upstream 100 bases:

>100_bases
AAAAATAGGATAAGGAAAACAAGCATATATGAACATAAAAAGATTCAGTCTTGGTTACCATAAGTTAACTTAGATTTTTA
TTTTAACTTAGTGAGAGGAT

Downstream 100 bases:

>100_bases
AAGACTCATTTCTAGATATGCGTTTTTGCCCTAAATGTGGTTCTTTCTTGAAGGTAAAAGGTAACAAAATGGTTTGTAGT
AAGTGTGGGTATTCTGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MMMTVGLFISHGSPTILTEENKWKDLLRNIGKDVMEKYKPDTIIVSSPHFISWSGDYYIENSEKLECIQDYYGFPEETYK
YCYEAYNDVELVNEIVMASDGIIKEDNRWGLDHGAWIPLLFMFPEYKPKVVTISITDNSPESHYAIGEKIRNAVEKLGRK
VLFLATGSPTHRLDLFYFKITPKPTNFDIILMDMIKSGEFDKILRINELYPKEYQTAMPEGNLNTLYILLGFVKPKRAEI
LGYDTPWPGVSMLAASFYD

Sequences:

>Translated_259_residues
MMMTVGLFISHGSPTILTEENKWKDLLRNIGKDVMEKYKPDTIIVSSPHFISWSGDYYIENSEKLECIQDYYGFPEETYK
YCYEAYNDVELVNEIVMASDGIIKEDNRWGLDHGAWIPLLFMFPEYKPKVVTISITDNSPESHYAIGEKIRNAVEKLGRK
VLFLATGSPTHRLDLFYFKITPKPTNFDIILMDMIKSGEFDKILRINELYPKEYQTAMPEGNLNTLYILLGFVKPKRAEI
LGYDTPWPGVSMLAASFYD
>Mature_259_residues
MMMTVGLFISHGSPTILTEENKWKDLLRNIGKDVMEKYKPDTIIVSSPHFISWSGDYYIENSEKLECIQDYYGFPEETYK
YCYEAYNDVELVNEIVMASDGIIKEDNRWGLDHGAWIPLLFMFPEYKPKVVTISITDNSPESHYAIGEKIRNAVEKLGRK
VLFLATGSPTHRLDLFYFKITPKPTNFDIILMDMIKSGEFDKILRINELYPKEYQTAMPEGNLNTLYILLGFVKPKRAEI
LGYDTPWPGVSMLAASFYD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=171, Percent_Identity=27.4853801169591, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29936; Mature: 29936

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMTVGLFISHGSPTILTEENKWKDLLRNIGKDVMEKYKPDTIIVSSPHFISWSGDYYIE
CEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEE
NSEKLECIQDYYGFPEETYKYCYEAYNDVELVNEIVMASDGIIKEDNRWGLDHGAWIPLL
CCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEHE
FMFPEYKPKVVTISITDNSPESHYAIGEKIRNAVEKLGRKVLFLATGSPTHRLDLFYFKI
EECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEEE
TPKPTNFDIILMDMIKSGEFDKILRINELYPKEYQTAMPEGNLNTLYILLGFVKPKRAEI
CCCCCCCCEEEEEHHCCCCCHHEEEECCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEE
LGYDTPWPGVSMLAASFYD
EECCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MMMTVGLFISHGSPTILTEENKWKDLLRNIGKDVMEKYKPDTIIVSSPHFISWSGDYYIE
CEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEE
NSEKLECIQDYYGFPEETYKYCYEAYNDVELVNEIVMASDGIIKEDNRWGLDHGAWIPLL
CCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEHE
FMFPEYKPKVVTISITDNSPESHYAIGEKIRNAVEKLGRKVLFLATGSPTHRLDLFYFKI
EECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEEE
TPKPTNFDIILMDMIKSGEFDKILRINELYPKEYQTAMPEGNLNTLYILLGFVKPKRAEI
CCCCCCCCEEEEEHHCCCCCHHEEEECCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEE
LGYDTPWPGVSMLAASFYD
EECCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]