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The map label for this gene is ydcM [C]

Identifier: 15898487

GI number: 15898487

Start: 1525316

End: 1526503

Strand: Reverse

Name: ydcM [C]

Synonym: SSO1672

Alternate gene names: 15898487

Gene position: 1526503-1525316 (Counterclockwise)

Preceding gene: 15898488

Following gene: 15898486

Centisome position: 51.02

GC content: 42.0

Gene sequence:

>1188_bases
ATGCCCACCTTAGGGTTTCGCTTCCGTGCATACACTGACGAACAAACCCTTAGGGCGTTAAAAGCCCAGTTGAAGTTAGC
GTGCAAAATCTACAACACCTTAAGGTGGGCAGACATCTACTTTTACCAAAGGGATGGGAAAGGACTAACACAAACTGAGT
TAAGACAGTTGGCTCTAGATCTGAGAAAACAAGATGATGAGTATAAGAAACTCTACTCCCAAGTAGTTCAACAAATAGCT
GACCGTTATTACGAAGCTAGACAGAGGTTTTTCGACGGTTTAGCACGTTTCCCGAAAGAAAGGAAACCTCACAAGTACTA
CTCCCTTGTCTATACGCAAAGCGGTTGGAAAATACTTCAAGTTAGAGAAATAAGAAAAGGAAGCAAGAAGAAACTAATAA
CGCTTAAACTATCAAATCTTGGTACGTTCAAGGTAATAGTTCACCGAGACTTTCCCCTTGACAAAGTAAAGAGAGTGATA
GTGAAGCTAACAAGATCTGAGAGGATTTACATCACTTTCGTAGTTGATCACGAATTCCCCAAGTTACCTAACACTGGTAA
GGTAGTGGCGATAGATGTTGGTGTAGAAAAGTTGTTAGTAACGTCAGATGGTGAGTATTTTCCTAATTTGAGACCTTACG
AGAAAGCGTTATGGAAAGTGAAGCATCTACACAGAGAACTTTCAAGGAAGAAGTTCCTCTCTAATAATTGGTTTAAGGCT
AAGGTTAAGCTTGCTAGGGCTTATGAGTATTTGAAGAATCTAAGAACGGATCTTTACATGAAGTTGGGTAAATGGTTTGC
TGAGCATTACGACGTTGTAGTCATGGAGGACATTCATGTTAAGCAGTTGATAGGTAAGTCATTAAGGTCTCTGAGGAGGA
GATTGAGTGACGTCGCGTTCAGCGAGCTTAGAGATTTGATTAAGTATCAGTTGGAGAAATACGGTAAGAAACTCATCCTA
GTTAATCCTGCATACACTTCCAAAACTTGTGCTAAGTGCGGGTACGTAAAAGAAGATCTGTCTCTATCTGATCGTGTTTT
CGTTTGTCCCAACTGTGGTTGGATTGCAGATCGTGACTATAATGCTTCTCTTAACATCTTACGTGGATCGGGGTCGGAGC
GACCCTTAGTGTGGAGCTCCGCCCTCTACCAGTACCAGCACTTCGGTACTGGCATGGCAGAGCTGTGA

Upstream 100 bases:

>100_bases
GTTTATAACAGACGGGGGTTCAAAGGGGGCGGAAAGCTTCTCTTTGAGACGGATCCCTTTGTAGAAAAGTTAAAATAGGA
AAATAACGAAATACACATCA

Downstream 100 bases:

>100_bases
AGCAGGAAGCTCCCTCATTTATGAGGGGGTAGCTCACAAGAAAACATGAGAATCTCTGTTAATGACCTATACAATCTCGC
AATAGGGAGTTCAATATTAG

Product: transposase ISC1316

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKKLYSQVVQQIA
DRYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVI
VKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKA
KVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLIL
VNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL

Sequences:

>Translated_395_residues
MPTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKKLYSQVVQQIA
DRYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVI
VKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKA
KVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLIL
VNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL
>Mature_394_residues
PTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKKLYSQVVQQIAD
RYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVIV
KLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKAK
VKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAFSELRDLIKYQLEKYGKKLILV
NPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=313, Percent_Identity=30.0319488817891, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46591; Mature: 46460

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALD
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHH
LRKQDDEYKKLYSQVVQQIADRYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE
VREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFP
EHHHCCCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCC
KLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
SELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDY
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCHHCCCCCCCEEECCCCCEEECCCC
NASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL
CCEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PTLGFRFRAYTDEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALD
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHH
LRKQDDEYKKLYSQVVQQIADRYYEARQRFFDGLARFPKERKPHKYYSLVYTQSGWKILQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE
VREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVIVKLTRSERIYITFVVDHEFP
EHHHCCCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCC
KLPNTGKVVAIDVGVEKLLVTSDGEYFPNLRPYEKALWKVKHLHRELSRKKFLSNNWFKA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KVKLARAYEYLKNLRTDLYMKLGKWFAEHYDVVVMEDIHVKQLIGKSLRSLRRRLSDVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
SELRDLIKYQLEKYGKKLILVNPAYTSKTCAKCGYVKEDLSLSDRVFVCPNCGWIADRDY
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCHHCCCCCCCEEECCCCCEEECCCC
NASLNILRGSGSERPLVWSSALYQYQHFGTGMAEL
CCEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]