Click here to switch to the map view.

The map label for this gene is 15898203

Identifier: 15898203

GI number: 15898203

Start: 1198519

End: 1199217

Strand: Direct

Name: 15898203

Synonym: SSO1363

Alternate gene names: NA

Gene position: 1198519-1199217 (Clockwise)

Preceding gene: 15898202

Following gene: 15898205

Centisome position: 40.05

GC content: 38.63

Gene sequence:

>699_bases
TTGGACAATGAAAACACTCAAGATAGCACTACAAGAACAAGGAATAGAATACAAGAAATCCAGACTATACGAACTAGTCC
ACGAACTAGGATACAACCTAGTAAAACCCAGACCTACCAACATCCAAGCAGAAAAGGACAAGTGGGAAGATTTTTAAAAA
AAATAAAGAAATTGGAAAGAAAGGCACTGTTCTTTCTAGACGAGTGTAGGACAGTAATTAGCACGTCAATTAAGAAGGTT
CTAGCTAAGGTTGGCAGTAAGCCCGTAATGCGCGTCAATATAGGTTTTTCCTCAATCTATGTTATTCTAGCTATAAACGC
TTGGACCGGCGAAGTAGTGGTTTCTCTTGCTGAAAGGCCTAACTCTGAATCCGTTAAGTATTTCTTGAGGTACTTTAAGA
GGCGTGTGGGTAGTGGTAGGGTTTACATGGTCATGGATAATTACTCTCCTCACAAGACTAAGGGTACGCTTGAGGTTTGT
CGCAGGAAGGGTATTCATCCCGTGTTTACTCCTCCTTACTCGCCTGAGCTTAATATGGCTGAGGCGGTCTTCAAGTCCCT
CAAGAACTACATGAGCAATAAAATATTCTATACGATAGAAGACGTTAAAAACTGTATTAAACAGTTCTTTGAAGAAAATA
AGTATAGATTTAATCTTAATGCAATAACATACCTAGGATTAGATAAAATTGAAGTCTAA

Upstream 100 bases:

>100_bases
AGGACAAGCCCAGATCAGGAAGACCCAGAAAAGTAGAAGAGGAAAAGATAAAACAAATTCTGGAAGATAAGCCCCAAAAA
TACGGAATACAACAAGAATA

Downstream 100 bases:

>100_bases
GAACTTTCCGGAAATACTAGTGAATCTGATCACTATTTGATATGAAGATAATAGTATTTAGGAAGAAAATTATTCAATAT
ATCTACAGTATCATATAACA

Product: second ORF in transposon ISC1048

Products: NA

Alternate protein names: ORF2 In Transposon ISC; Transposase ISC

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MDNENTQDSTTRTRNRIQEIQTIRTSPRTRIQPSKTQTYQHPSRKGQVGRFLKKIKKLERKALFFLDECRTVISTSIKKV
LAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAERPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVC
RRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYLGLDKIEV

Sequences:

>Translated_232_residues
MDNENTQDSTTRTRNRIQEIQTIRTSPRTRIQPSKTQTYQHPSRKGQVGRFLKKIKKLERKALFFLDECRTVISTSIKKV
LAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAERPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVC
RRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYLGLDKIEV
>Mature_232_residues
MDNENTQDSTTRTRNRIQEIQTIRTSPRTRIQPSKTQTYQHPSRKGQVGRFLKKIKKLERKALFFLDECRTVISTSIKKV
LAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAERPNSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVC
RRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYLGLDKIEV

Specific function: Unknown

COG id: COG3335

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27011; Mature: 27011

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNENTQDSTTRTRNRIQEIQTIRTSPRTRIQPSKTQTYQHPSRKGQVGRFLKKIKKLER
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
KALFFLDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAERP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHEEEEEEEEECCHHHHHHHHHHCC
NSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMA
CHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHH
EAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYLGLDKIEV
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCEEEEECEEEEECCHHCCC
>Mature Secondary Structure
MDNENTQDSTTRTRNRIQEIQTIRTSPRTRIQPSKTQTYQHPSRKGQVGRFLKKIKKLER
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
KALFFLDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAERP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHEEEEEEEEECCHHHHHHHHHHCC
NSESVKYFLRYFKRRVGSGRVYMVMDNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMA
CHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHH
EAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYLGLDKIEV
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCEEEEECEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA