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The map label for this gene is caiB [H]

Identifier: 15898184

GI number: 15898184

Start: 1179193

End: 1180293

Strand: Direct

Name: caiB [H]

Synonym: SSO1343

Alternate gene names: 15898184

Gene position: 1179193-1180293 (Clockwise)

Preceding gene: 15898182

Following gene: 15898185

Centisome position: 39.41

GC content: 37.15

Gene sequence:

>1101_bases
ATGTATAGGGTTATTGAGTTAGGACACGTAATTTCAGCACCATTCGCAGGAGAGATCTTGAGACATTTAGGATTTGAGGT
AATAAAGATTGAACCACTACTAGGAGATCCAAGTAGGAAAGACGACGTTTTAGTAGATTCCATGTTCGTCTTCAATAATA
GGGGTAAAAGATCAATTTCCGTAGATTTAAGAAAGGAAAAGGGAAAAGAGGTTTTCCTAAGATTAGTACGGAACTCCCAC
GTCTTAATCGAGAACTTATCTCCTCATGTAATGGATAGGCTAGGATTATCAGATGACGTTATATTTTCGACCAATCCCTC
CTTAGTATACTGCTCCATAAAGGGATATCCTAAGGGGAAATACGAAAATCTACCTGCCTTCGGTACCATAATTGAGGCGG
AAAGCGGTATCATGGATGCTAATGGAAAGGCAAGGTTACCTGCTTCAATAACCGACATGAACGCATCTACGTATTGCGTA
ATTACGATTTTATGGGCACTGCTTATGAAGAAACCCGGGCACTATAGGGTGAGCATTATCCAAGCCAATACAGTTTGGTT
AGGATATTATCTCATAGCATATCAGAAATACGGTAAGCTCTTTGAAGCTGGAAAAGATGAACTTCCCTTCTGGGCTCCCT
ATGAGTTATTCAAGAGTTCCGAGGAGAAGGAATTTTACTTAGCAGTAAATGATAACGAAAAATTTACAAAGCTCTGTAAG
GCACTGGGATTAGAGGACCTATTAGCTGATGAAAGGTTTAAAACTAACGCGGATAGGGTTAGAAATAGAAAGATATTACA
TGAAAAGCTTCAACAGAAGTTCAGCTCAATGAAACTGGAAGAGATAATGAACATTTTACGTTATAATGATATACCCGTGG
GTAAATTAAATAACTTGAAAGATTTAATTAGTAACGAATTAGTGGAATGGGATACGTTTAGAAACGTTCAAGTACCTAAA
CTCCCTCTACCAGGTAGTCTTAATAGCCAACATGTGCCAAATGTAGGGGAAGATACTCTATATATATTAAAAGAGCTTGG
GTATTCAGAAAACGAAATAGAAAGTATGATAAAAGAAAATGTAATTAATTATAACAAATAG

Upstream 100 bases:

>100_bases
AAGAAGACTATCTCAATTCTAGTATATAACTATTATTATTTATGATAGTATTAAATTGATGGTAAGTTAAGCTTTTAAAT
ATAAATTAGGAAAAGGCTTT

Downstream 100 bases:

>100_bases
AGAAGAAAAGAAGGGGTTGGACTTTTATAGGATTTCATGATATTTAAAATCAAACAGGGGAACCTTTCCACCAAGGAACT
CCATGAACTTCTCACTGCCC

Product: L-carnitine dehydratase, putative (caiB)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MYRVIELGHVISAPFAGEILRHLGFEVIKIEPLLGDPSRKDDVLVDSMFVFNNRGKRSISVDLRKEKGKEVFLRLVRNSH
VLIENLSPHVMDRLGLSDDVIFSTNPSLVYCSIKGYPKGKYENLPAFGTIIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVSIIQANTVWLGYYLIAYQKYGKLFEAGKDELPFWAPYELFKSSEEKEFYLAVNDNEKFTKLCK
ALGLEDLLADERFKTNADRVRNRKILHEKLQQKFSSMKLEEIMNILRYNDIPVGKLNNLKDLISNELVEWDTFRNVQVPK
LPLPGSLNSQHVPNVGEDTLYILKELGYSENEIESMIKENVINYNK

Sequences:

>Translated_366_residues
MYRVIELGHVISAPFAGEILRHLGFEVIKIEPLLGDPSRKDDVLVDSMFVFNNRGKRSISVDLRKEKGKEVFLRLVRNSH
VLIENLSPHVMDRLGLSDDVIFSTNPSLVYCSIKGYPKGKYENLPAFGTIIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVSIIQANTVWLGYYLIAYQKYGKLFEAGKDELPFWAPYELFKSSEEKEFYLAVNDNEKFTKLCK
ALGLEDLLADERFKTNADRVRNRKILHEKLQQKFSSMKLEEIMNILRYNDIPVGKLNNLKDLISNELVEWDTFRNVQVPK
LPLPGSLNSQHVPNVGEDTLYILKELGYSENEIESMIKENVINYNK
>Mature_366_residues
MYRVIELGHVISAPFAGEILRHLGFEVIKIEPLLGDPSRKDDVLVDSMFVFNNRGKRSISVDLRKEKGKEVFLRLVRNSH
VLIENLSPHVMDRLGLSDDVIFSTNPSLVYCSIKGYPKGKYENLPAFGTIIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVSIIQANTVWLGYYLIAYQKYGKLFEAGKDELPFWAPYELFKSSEEKEFYLAVNDNEKFTKLCK
ALGLEDLLADERFKTNADRVRNRKILHEKLQQKFSSMKLEEIMNILRYNDIPVGKLNNLKDLISNELVEWDTFRNVQVPK
LPLPGSLNSQHVPNVGEDTLYILKELGYSENEIESMIKENVINYNK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=399, Percent_Identity=27.5689223057644, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI300863124, Length=355, Percent_Identity=28.4507042253521, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI300863126, Length=386, Percent_Identity=27.2020725388601, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI13376042, Length=355, Percent_Identity=25.9154929577465, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI42794625, Length=387, Percent_Identity=25.3229974160207, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266456254, Length=387, Percent_Identity=25.3229974160207, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI266458397, Length=243, Percent_Identity=27.5720164609054, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI87082093, Length=314, Percent_Identity=30.2547770700637, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786222, Length=393, Percent_Identity=25.4452926208651, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788717, Length=146, Percent_Identity=33.5616438356164, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=28.6075949367089, Blast_Score=141, Evalue=8e-34,
Organism=Drosophila melanogaster, GI24585488, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41916; Mature: 41916

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRVIELGHVISAPFAGEILRHLGFEVIKIEPLLGDPSRKDDVLVDSMFVFNNRGKRSIS
CCEEEEECHHHCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHEEEEECCCCCEEEE
VDLRKEKGKEVFLRLVRNSHVLIENLSPHVMDRLGLSDDVIFSTNPSLVYCSIKGYPKGK
EEECHHCCHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCC
YENLPAFGTIIEAESGIMDANGKARLPASITDMNASTYCVITILWALLMKKPGHYRVSII
CCCCCCHHEEEECCCCEECCCCCEECCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
QANTVWLGYYLIAYQKYGKLFEAGKDELPFWAPYELFKSSEEKEFYLAVNDNEKFTKLCK
EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHH
ALGLEDLLADERFKTNADRVRNRKILHEKLQQKFSSMKLEEIMNILRYNDIPVGKLNNLK
HHCHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHH
DLISNELVEWDTFRNVQVPKLPLPGSLNSQHVPNVGEDTLYILKELGYSENEIESMIKEN
HHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
VINYNK
HCCCCC
>Mature Secondary Structure
MYRVIELGHVISAPFAGEILRHLGFEVIKIEPLLGDPSRKDDVLVDSMFVFNNRGKRSIS
CCEEEEECHHHCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHEEEEECCCCCEEEE
VDLRKEKGKEVFLRLVRNSHVLIENLSPHVMDRLGLSDDVIFSTNPSLVYCSIKGYPKGK
EEECHHCCHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCC
YENLPAFGTIIEAESGIMDANGKARLPASITDMNASTYCVITILWALLMKKPGHYRVSII
CCCCCCHHEEEECCCCEECCCCCEECCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
QANTVWLGYYLIAYQKYGKLFEAGKDELPFWAPYELFKSSEEKEFYLAVNDNEKFTKLCK
EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHH
ALGLEDLLADERFKTNADRVRNRKILHEKLQQKFSSMKLEEIMNILRYNDIPVGKLNNLK
HHCHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHH
DLISNELVEWDTFRNVQVPKLPLPGSLNSQHVPNVGEDTLYILKELGYSENEIESMIKEN
HHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
VINYNK
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]