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The map label for this gene is aubA

Identifier: 15897958

GI number: 15897958

Start: 948084

End: 949358

Strand: Reverse

Name: aubA

Synonym: SSO1093

Alternate gene names: 15897958

Gene position: 949358-948084 (Counterclockwise)

Preceding gene: 15897959

Following gene: 15897957

Centisome position: 31.73

GC content: 32.63

Gene sequence:

>1275_bases
ATGAAAGGAAGAGTTAGAATAAGGGGAATCTACGCTACAGCATTAACGTCAATTTTTTCCTCTCTTTCATACGAAATTGT
ACAACAATCTGTGGAAATATCAGAACGATTTATGCAAGAAATTAATAACTTATCAGCTGATATCACAATAAAGGATTTTG
AGGATGATAGAGGCAAGATCATCGTAATGGGAAATGGAATTATAGAAGATGACTTACGTAACGTTTTTAAATACTCATTC
CATTGGAGAAGCCCAGTTAAACTATACTCGGTAATAGAAATAGACGAAAGTTGCACTTACGCTAACTTTAAAGTAGAACC
TTGCTTGAGAGAGGGAATCGTTATAAAACCACCTTATGACGGAAAAATAATACTAAGTGAAACTAAGGCCGTAAGTAAAT
ACGCTATTGTATGGAGAGGGAAGGGAATAACTACTTTTTCAGAGCACATCGTTGATGAGGAAGAAAAAATGAGGCTATTA
ACCTTGAGTTTACCTCTTAATAGAAAAGGATATAATGTAAAGTGGAGAAGTAATGCAAAGTATGTCGCATTAAATGAATT
GAAAGAGGATCTAGAAAGGTTAATATTAAGGTATGAAAATAGGGAGTTCAGAGATCAAGGAGAGGATTTTTATTTAATAA
CTCTTTCATTACCGGATAAACTGTATTTAGATGAGGTTAGAAAGAATGTAGTTGATACTGTTAAGTATCATCATATGTTA
AAGTTAAGCTATAATAGGGAAGTTGATTCTTTGGAAAAGGATAAGAAAGGTTCTCTCGGTAAATTATTGGAAGGGCTAAT
CTCAGATTTCTTGAAAATTGAACACATTAAGGCTGATGGAAAGGTAATTTATTTGAGAGGTGGAAAGGTAATTGAAAAGG
AAGTTAACGATAACGGATATAGAATAGTCCTTAGGCGTGAGTTTGAAGGTAACGGGATTCTAGATGGTATAGGTAAGAAG
ATAGAGGAGGGTGATTACGATATTGTAGAATATAATTCTGATAAGTGGTATCAGATACATAAGTATTATAGTGGTATAGA
TAACTCACTAAAGGGAGTCTACATTAATATATCAACACCACCGGAATTACTTAGAGGAAAAATAAGGTATTTGGATCTAG
AAATAGATATTGCAATTAGAGATTCAGAAATAGCATTATTAGATGAAGATGAACTAAATAAAAAGAGTATTTACATGCCC
TCTTCGCTAGTAAATAAAGCTAAGGAAGTTGTAAATTATCTAATAAATCGAATTCAACAAAATAAGTTGAGTTGA

Upstream 100 bases:

>100_bases
ATAACTACTAAGGGAGTTGCAAGAATAGATAATAACGTTGAACTAATGTATGTTAAGAAAGGAGGAATATTAAATTATGT
GCTCGAGAAATTCTTAGAAA

Downstream 100 bases:

>100_bases
TAAAATTATAGATTAAGATCTTCTATGGGGATTCAGATATCCATTGCGAATTCACTTTATTTCAAAGATTACTACGAATT
TAATTGAATGAAGACGATTA

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKIIVMGNGIIEDDLRNVFKYSF
HWRSPVKLYSVIEIDESCTYANFKVEPCLREGIVIKPPYDGKIILSETKAVSKYAIVWRGKGITTFSEHIVDEEEKMRLL
TLSLPLNRKGYNVKWRSNAKYVALNELKEDLERLILRYENREFRDQGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHML
KLSYNREVDSLEKDKKGSLGKLLEGLISDFLKIEHIKADGKVIYLRGGKVIEKEVNDNGYRIVLRREFEGNGILDGIGKK
IEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTPPELLRGKIRYLDLEIDIAIRDSEIALLDEDELNKKSIYMP
SSLVNKAKEVVNYLINRIQQNKLS

Sequences:

>Translated_424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKIIVMGNGIIEDDLRNVFKYSF
HWRSPVKLYSVIEIDESCTYANFKVEPCLREGIVIKPPYDGKIILSETKAVSKYAIVWRGKGITTFSEHIVDEEEKMRLL
TLSLPLNRKGYNVKWRSNAKYVALNELKEDLERLILRYENREFRDQGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHML
KLSYNREVDSLEKDKKGSLGKLLEGLISDFLKIEHIKADGKVIYLRGGKVIEKEVNDNGYRIVLRREFEGNGILDGIGKK
IEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTPPELLRGKIRYLDLEIDIAIRDSEIALLDEDELNKKSIYMP
SSLVNKAKEVVNYLINRIQQNKLS
>Mature_424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKIIVMGNGIIEDDLRNVFKYSF
HWRSPVKLYSVIEIDESCTYANFKVEPCLREGIVIKPPYDGKIILSETKAVSKYAIVWRGKGITTFSEHIVDEEEKMRLL
TLSLPLNRKGYNVKWRSNAKYVALNELKEDLERLILRYENREFRDQGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHML
KLSYNREVDSLEKDKKGSLGKLLEGLISDFLKIEHIKADGKVIYLRGGKVIEKEVNDNGYRIVLRREFEGNGILDGIGKK
IEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTPPELLRGKIRYLDLEIDIAIRDSEIALLDEDELNKKSIYMP
SSLVNKAKEVVNYLINRIQQNKLS

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_SULSO (Q97Z43)

Other databases:

- EMBL:   AE006641
- PIR:   B99262
- RefSeq:   NP_342563.1
- ProteinModelPortal:   Q97Z43
- GeneID:   1454132
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO1093
- NMPDR:   fig|273057.1.peg.986
- HOGENOM:   HBG705374
- OMA:   RGIYSTA
- ProtClustDB:   CLSK2752042
- BioCyc:   SSOL273057:SSO1093-MONOMER
- HAMAP:   MF_01910
- InterPro:   IPR007295
- InterPro:   IPR016730
- PIRSF:   PIRSF018644

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 49257; Mature: 49257

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKI
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEE
IVMGNGIIEDDLRNVFKYSFHWRSPVKLYSVIEIDESCTYANFKVEPCLREGIVIKPPYD
EEEECCEEHHHHHHHHEEECCCCCCCEEEEEEEECCCCEEEEEEECHHHHCCEEEECCCC
GKIILSETKAVSKYAIVWRGKGITTFSEHIVDEEEKMRLLTLSLPLNRKGYNVKWRSNAK
CEEEEECCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCEEEECCCCC
YVALNELKEDLERLILRYENREFRDQGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHML
EEEHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEE
KLSYNREVDSLEKDKKGSLGKLLEGLISDFLKIEHIKADGKVIYLRGGKVIEKEVNDNGY
EEECCCCCHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEECCEEEEEECCCCCE
RIVLRREFEGNGILDGIGKKIEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTP
EEEEEEECCCCCCHHHHCCCCCCCCCEEEEECCCCCEEHHHHHCCCCCCCCEEEEEECCC
PELLRGKIRYLDLEIDIAIRDSEIALLDEDELNKKSIYMPSSLVNKAKEVVNYLINRIQQ
HHHHCCEEEEEEEEEEEEEECCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
NKLS
HCCC
>Mature Secondary Structure
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKI
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEE
IVMGNGIIEDDLRNVFKYSFHWRSPVKLYSVIEIDESCTYANFKVEPCLREGIVIKPPYD
EEEECCEEHHHHHHHHEEECCCCCCCEEEEEEEECCCCEEEEEEECHHHHCCEEEECCCC
GKIILSETKAVSKYAIVWRGKGITTFSEHIVDEEEKMRLLTLSLPLNRKGYNVKWRSNAK
CEEEEECCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCEEEECCCCC
YVALNELKEDLERLILRYENREFRDQGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHML
EEEHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEE
KLSYNREVDSLEKDKKGSLGKLLEGLISDFLKIEHIKADGKVIYLRGGKVIEKEVNDNGY
EEECCCCCHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEECCEEEEEECCCCCE
RIVLRREFEGNGILDGIGKKIEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTP
EEEEEEECCCCCCHHHHCCCCCCCCCEEEEECCCCCEEHHHHHCCCCCCCCEEEEEECCC
PELLRGKIRYLDLEIDIAIRDSEIALLDEDELNKKSIYMPSSLVNKAKEVVNYLINRIQQ
HHHHCCEEEEEEEEEEEEEECCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
NKLS
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11427726