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The map label for this gene is ompA [H]

Identifier: 15889974

GI number: 15889974

Start: 2707488

End: 2708150

Strand: Reverse

Name: ompA [H]

Synonym: Atu2722

Alternate gene names: 15889974

Gene position: 2708150-2707488 (Counterclockwise)

Preceding gene: 159185347

Following gene: 159185346

Centisome position: 95.3

GC content: 62.44

Gene sequence:

>663_bases
ATGATCAAAAAAATCGCGATCGTCGCCCTTTGCGGCACCTATCTTTCCGCCTGCACCACCACTGATCCCTATACGGGCGA
GCAGAAGATGTCGAACACGGCCGGCGGTGCCGGCATCGGCGCTGTCGTTGGTGCTCTCGGTGGTTTGGCTGTCGGCGGCT
CGCCGGTTGGTCGCCGCAACGCCGCGCTGATCGGTGCGGGCATCGGTGCTCTCGCTGGCGGCGCCATCGGCAACTACATG
GACGGGCAGGAAGCCGAGCTTCGCGCCCAGCTTCAGGGAACCGGCGTTTCGGTGACCCGCCGCGGTGACAGCATCGTCCT
CAACATGCCATCCAACATCACCTTTGCCACGGATCAGGACCAGGTCATTCCGCCGTTCTACCAGACACTCGATTCTGTCG
CCATCGTACTGAACAAGTTCAACCGTACGCTGATCGACATCAACGGCCACACCGATTCCACCGGCAGCCTGCAGCATAAC
CAGGCGCTCTCCGAGCGTCGTGCTGCCTCTGTCGCCAATTATCTCGGTGCACGCGGCGTCGACCAGCGCCGTATTTCGAC
GCTCGGCTTCGGCCCGTCTCAGCCGATTGCTTCGAATGCCACGTCGGATGGTCGTGCGCAGAACCGCCGCGTCGAAGTGC
TGATTTCGCCGCTCAAGGGCTGA

Upstream 100 bases:

>100_bases
AAAGCGTTTTGGCCAGAAAGATGCGGCGGAGTAATGCGTAAGTTGCAACGGCCTGAATTTCACTGTCATACCTCCTGAAC
CTCTCGGAGCATCCAGAAAA

Downstream 100 bases:

>100_bases
TTGGATGATGAAAAGCTGAGAGGTCAGCTTTTCCGTTCGGCGATGAATCTTGCGGCCGCGATGAGAATCGCGGCCTTTTC
GCCGTAGGGGGCGAGGAGTT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRNAALIGAGIGALAGGAIGNYM
DGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQDQVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHN
QALSERRAASVANYLGARGVDQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG

Sequences:

>Translated_220_residues
MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRNAALIGAGIGALAGGAIGNYM
DGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQDQVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHN
QALSERRAASVANYLGARGVDQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG
>Mature_220_residues
MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRNAALIGAGIGALAGGAIGNYM
DGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQDQVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHN
QALSERRAASVANYLGARGVDQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=220, Percent_Identity=49.0909090909091, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22641; Mature: 22641

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRN
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
AALIGAGIGALAGGAIGNYMDGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQD
CEEEECCHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCC
QVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHNQALSERRAASVANYLGARGV
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRN
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
AALIGAGIGALAGGAIGNYMDGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQD
CEEEECCHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCCC
QVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHNQALSERRAASVANYLGARGV
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]