Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is malE [C]
Identifier: 15889858
GI number: 15889858
Start: 2580262
End: 2581494
Strand: Reverse
Name: malE [C]
Synonym: Atu2601
Alternate gene names: 15889858
Gene position: 2581494-2580262 (Counterclockwise)
Preceding gene: 15889859
Following gene: 15889857
Centisome position: 90.85
GC content: 58.8
Gene sequence:
>1233_bases ATGGCACTGAAACATTACGGATTGGCGCTCTGCGCTTTCGCATTTGCCGGTTCCACCGCCCTTGGCACGGTGGTGGCACA TGCCGCCGACAAGGAGATCAGCTGGATCTATTGCGGCGACAAGATGGACCCCATCCATGAAAAATACATCAAGGAATGGG AAGGCAAGAACGCAGGCTGGAAAGTCGTGCCTGAGGTTGTCGGCTGGGAGCAATGCCAGGACAAGGCCACCACGCTTGCA GCCGCCGGCACGCCGGTTTCCATGGCCTATGTCGGTTCGCGCACGCTGAAGCAGTTCGCGCAGAACGATCTGATCGTTCC GGTGCCGATGACCGAAGACGAAAAGAAAACCTATTACCCCAACATCGTCGACACGGTCACCTTCGAGGACACGCAATGGG GTGTGCCGGTCGCTTTCTCGACCAAGGCGCTCTACTGGAACAAGGACCTGTTCAAGCAGGCCGGTCTCGATCCGGAAACG CCGCCGAAGACCTGGGCTGAAGAGATCGCCTTTGCCAAGCAGATCAAGGAAAAGACCGGTATCGCCGGTTACGGCCTGCC CGCCAAGACCTTCGACAACACCATGCACCAGTTCATGCACTGGGTTTACACCAATAACGGCAAGGTCATCGATGGCGACA AGATCACCGTCGACAGCCCGCAGGTTCTTGCAGCCCTGAAGGCATACAAGGACATCACGCCTTACTCCGTTGAAGGTCCG ACGGCCTATGAGCAGAATGAAATCCGCGCCATCTTCCTCGATGGCAAGGTCGGCATGATCCAGGCCGGTTCGGGTGCTGC AACCCGTCTGCAGGCAACGAAGATCAACTGGGGCATCGCAACCCTGCCGCTTGGCCCTGAAGCCAAGGGTCCCGGCACGC TGCTCATCACCGACAGCCTCGCCATCTTCAAGGGAACCGGCGTGGAAGAAAAGGCGACCGAATTCGCCAAGTTCATCACC TCTCCCGGCCCGCAGGGCGAATACGAGTTGCAGGGCGGCGCTGGTCTCACCCCGCTTCGTCCGTCGCCGAAGGTTGATGA GTTCATCGCCAAGGATCCCTTCTGGAAGCCGCTGATCGACGGTATCGCCTACGGTGGTCCCGAGCCGCTCTTCACCGACT ACAAGGGCTTCCAGGACGTGATGATCGAGATGGTGCAGTCTGTCGTGACCGGCAAGGCAACACCGGAAGATGCGGCAAAG AAGGCATCCGCCGCTCTCGAGCAGTACAAATAA
Upstream 100 bases:
>100_bases TCGCGATCTTCCTGATGCAACGATATCTCGTCGGCGGGCTGACCGCCGGCGCGGTGAAATAAGCAATAACCGGAACGACT ACCAAAACGGGAGACTAAAT
Downstream 100 bases:
>100_bases TTCCTCATGAATACGGATGCGGGCGCAAGGCCGCCCGCATCCGGTCAATTTCGCCGCGGGAATTCCTGCGCTCTTTCTGG CGCTCCCTCCCGTGTCTTTC
Product: ABC transporter, substrate binding protein (maltose)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MALKHYGLALCAFAFAGSTALGTVVAHAADKEISWIYCGDKMDPIHEKYIKEWEGKNAGWKVVPEVVGWEQCQDKATTLA AAGTPVSMAYVGSRTLKQFAQNDLIVPVPMTEDEKKTYYPNIVDTVTFEDTQWGVPVAFSTKALYWNKDLFKQAGLDPET PPKTWAEEIAFAKQIKEKTGIAGYGLPAKTFDNTMHQFMHWVYTNNGKVIDGDKITVDSPQVLAALKAYKDITPYSVEGP TAYEQNEIRAIFLDGKVGMIQAGSGAATRLQATKINWGIATLPLGPEAKGPGTLLITDSLAIFKGTGVEEKATEFAKFIT SPGPQGEYELQGGAGLTPLRPSPKVDEFIAKDPFWKPLIDGIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAK KASAALEQYK
Sequences:
>Translated_410_residues MALKHYGLALCAFAFAGSTALGTVVAHAADKEISWIYCGDKMDPIHEKYIKEWEGKNAGWKVVPEVVGWEQCQDKATTLA AAGTPVSMAYVGSRTLKQFAQNDLIVPVPMTEDEKKTYYPNIVDTVTFEDTQWGVPVAFSTKALYWNKDLFKQAGLDPET PPKTWAEEIAFAKQIKEKTGIAGYGLPAKTFDNTMHQFMHWVYTNNGKVIDGDKITVDSPQVLAALKAYKDITPYSVEGP TAYEQNEIRAIFLDGKVGMIQAGSGAATRLQATKINWGIATLPLGPEAKGPGTLLITDSLAIFKGTGVEEKATEFAKFIT SPGPQGEYELQGGAGLTPLRPSPKVDEFIAKDPFWKPLIDGIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAK KASAALEQYK >Mature_409_residues ALKHYGLALCAFAFAGSTALGTVVAHAADKEISWIYCGDKMDPIHEKYIKEWEGKNAGWKVVPEVVGWEQCQDKATTLAA AGTPVSMAYVGSRTLKQFAQNDLIVPVPMTEDEKKTYYPNIVDTVTFEDTQWGVPVAFSTKALYWNKDLFKQAGLDPETP PKTWAEEIAFAKQIKEKTGIAGYGLPAKTFDNTMHQFMHWVYTNNGKVIDGDKITVDSPQVLAALKAYKDITPYSVEGPT AYEQNEIRAIFLDGKVGMIQAGSGAATRLQATKINWGIATLPLGPEAKGPGTLLITDSLAIFKGTGVEEKATEFAKFITS PGPQGEYELQGGAGLTPLRPSPKVDEFIAKDPFWKPLIDGIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAKK ASAALEQYK
Specific function: Probably part of an ABC transporter complex [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
Organism=Escherichia coli, GI1789862, Length=289, Percent_Identity=26.643598615917, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787569, Length=223, Percent_Identity=26.0089686098655, Blast_Score=62, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006061 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44652; Mature: 44521
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKHYGLALCAFAFAGSTALGTVVAHAADKEISWIYCGDKMDPIHEKYIKEWEGKNAGW CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC KVVPEVVGWEQCQDKATTLAAAGTPVSMAYVGSRTLKQFAQNDLIVPVPMTEDEKKTYYP EECHHHHCHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC NIVDTVTFEDTQWGVPVAFSTKALYWNKDLFKQAGLDPETPPKTWAEEIAFAKQIKEKTG CCEEEEEECCCCCCCCEEEECEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC IAGYGLPAKTFDNTMHQFMHWVYTNNGKVIDGDKITVDSPQVLAALKAYKDITPYSVEGP CCCCCCCHHHHHHHHHHHHHHEECCCCEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCC TAYEQNEIRAIFLDGKVGMIQAGSGAATRLQATKINWGIATLPLGPEAKGPGTLLITDSL CCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEEECCCEEECCCCCCCCCCCEEEEECCE AIFKGTGVEEKATEFAKFITSPGPQGEYELQGGAGLTPLRPSPKVDEFIAKDPFWKPLID EEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHH GIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAKKASAALEQYK HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure ALKHYGLALCAFAFAGSTALGTVVAHAADKEISWIYCGDKMDPIHEKYIKEWEGKNAGW CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC KVVPEVVGWEQCQDKATTLAAAGTPVSMAYVGSRTLKQFAQNDLIVPVPMTEDEKKTYYP EECHHHHCHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC NIVDTVTFEDTQWGVPVAFSTKALYWNKDLFKQAGLDPETPPKTWAEEIAFAKQIKEKTG CCEEEEEECCCCCCCCEEEECEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC IAGYGLPAKTFDNTMHQFMHWVYTNNGKVIDGDKITVDSPQVLAALKAYKDITPYSVEGP CCCCCCCHHHHHHHHHHHHHHEECCCCEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCC TAYEQNEIRAIFLDGKVGMIQAGSGAATRLQATKINWGIATLPLGPEAKGPGTLLITDSL CCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEEECCCEEECCCCCCCCCCCEEEEECCE AIFKGTGVEEKATEFAKFITSPGPQGEYELQGGAGLTPLRPSPKVDEFIAKDPFWKPLID EEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHH GIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAKKASAALEQYK HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA