| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is dppD [C]
Identifier: 15889780
GI number: 15889780
Start: 2483797
End: 2484627
Strand: Reverse
Name: dppD [C]
Synonym: Atu2515
Alternate gene names: 15889780
Gene position: 2484627-2483797 (Counterclockwise)
Preceding gene: 15889781
Following gene: 159185250
Centisome position: 87.44
GC content: 59.81
Gene sequence:
>831_bases ATGCTGGTCGAAATCGAAAATCTGAAGATCGCTTTCCAGACCCGCACCAGCCGCTTCGAGGCGGTGCGCGGTGTGTCCAT GAAGCTCGGCACCGAAAAGCTCGGCATCGTCGGTGAATCCGGTTCGGGCAAGAGCCTCACGGCGCGCGCGCTGATGAAGC TTTTGCCCTCCAATGCCGATATCAGGGCCGATAAGCTCGCTTTCGACGGTATCGACGTGCTTTCCGCCAGTGAAAAGCAG ATGCGCCAGATCCGGGGAAAACGGGCAGGTTTCATCCTTCAGGATCCGAAATATTCGCTGAATCCGGTCAAGACCATGGG CGCACAGATCGCTGAAGCCTGGCGTGCCCACAAGGGCGGCAGCAAGCGTGCGGCCATGGAAGCGGCCATCGCCCTGCTCG ATCAGGTGAAGATCCGCAATCCGCGTCAGGTTGCCTCGTCCTATGCCCATGAAGTTTCCGGCGGCATGGGCCAGCGCGTG ATGATCGCCATGATGCTGGCGCCCGATCCCGAGCTTCTGATCGCCGACGAACCGACCAGCGCGCTTGACGCCACAGTGCA GGCGGAAATCCTGCGGTTGATCGAGGAACTGGTGTCGGAACGCGGCATGGGCCTCATTCTCATCAGCCATGATCTGCCGC TCGTTTCGCATTTCTGCGACCGCGTCGCCGTGATGTATTCTGGCCGGGTGATGGAGGAGCTGAAGGCTTCCGAACTCCTG AAAGCCGAACATCCCTATACAAAGGGACTTCTGAACTGCATTCCCTCGCTGACGCATCCGCGCGAGCGTCTTCCCGTTCT CAACCGTGATGCAGCGTGGTCCAGCCAATGA
Upstream 100 bases:
>100_bases CGCCACCATTCCCGGCATCGCCATCTTCCTCGTCTCGCTCGCCTTCAACTTCCTCGGCGATGGCCTGCGTGACGTTCTCG ACCCGAAGGGACATTGAGCC
Downstream 100 bases:
>100_bases TCGACGTCGATAATCTCCGTATCAAGTTCGGCGACCGCGAAGTCGTGAAAGGCGTGTCCTTTTCGGTCGAAAAGGGCGGT AGCTTCGGCATCGTCGGTGA
Product: ABC transporter, nucleotide binding/ATPase protein (dipeptide)
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGKSLTARALMKLLPSNADIRADKLAFDGIDVLSASEKQ MRQIRGKRAGFILQDPKYSLNPVKTMGAQIAEAWRAHKGGSKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRV MIAMMLAPDPELLIADEPTSALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHFCDRVAVMYSGRVMEELKASELL KAEHPYTKGLLNCIPSLTHPRERLPVLNRDAAWSSQ
Sequences:
>Translated_276_residues MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGKSLTARALMKLLPSNADIRADKLAFDGIDVLSASEKQ MRQIRGKRAGFILQDPKYSLNPVKTMGAQIAEAWRAHKGGSKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRV MIAMMLAPDPELLIADEPTSALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHFCDRVAVMYSGRVMEELKASELL KAEHPYTKGLLNCIPSLTHPRERLPVLNRDAAWSSQ >Mature_276_residues MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGKSLTARALMKLLPSNADIRADKLAFDGIDVLSASEKQ MRQIRGKRAGFILQDPKYSLNPVKTMGAQIAEAWRAHKGGSKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRV MIAMMLAPDPELLIADEPTSALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHFCDRVAVMYSGRVMEELKASELL KAEHPYTKGLLNCIPSLTHPRERLPVLNRDAAWSSQ
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=252, Percent_Identity=25.7936507936508, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9961250, Length=252, Percent_Identity=25.7936507936508, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4505771, Length=252, Percent_Identity=25.7936507936508, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI153792144, Length=227, Percent_Identity=25.5506607929515, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI42741659, Length=252, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1789963, Length=265, Percent_Identity=44.9056603773585, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI145693107, Length=278, Percent_Identity=46.0431654676259, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1787759, Length=269, Percent_Identity=42.7509293680297, Blast_Score=218, Evalue=5e-58, Organism=Escherichia coli, GI48994883, Length=258, Percent_Identity=45.7364341085271, Blast_Score=214, Evalue=4e-57, Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=44.106463878327, Blast_Score=206, Evalue=1e-54, Organism=Escherichia coli, GI1787548, Length=267, Percent_Identity=37.8277153558052, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=37.4531835205993, Blast_Score=156, Evalue=1e-39, Organism=Escherichia coli, GI1789962, Length=247, Percent_Identity=37.246963562753, Blast_Score=144, Evalue=5e-36, Organism=Escherichia coli, GI1787758, Length=271, Percent_Identity=36.1623616236162, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789890, Length=251, Percent_Identity=35.4581673306773, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788225, Length=252, Percent_Identity=31.7460317460317, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=33.7719298245614, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786398, Length=251, Percent_Identity=30.2788844621514, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=31.6964285714286, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789032, Length=207, Percent_Identity=32.8502415458937, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=29.8319327731092, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787089, Length=222, Percent_Identity=31.0810810810811, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789672, Length=250, Percent_Identity=26.4, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786345, Length=237, Percent_Identity=29.535864978903, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788761, Length=258, Percent_Identity=28.2945736434109, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=30.6382978723404, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790739, Length=269, Percent_Identity=27.8810408921933, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=31.7796610169492, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788644, Length=158, Percent_Identity=34.1772151898734, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790525, Length=246, Percent_Identity=29.6747967479675, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790162, Length=244, Percent_Identity=26.2295081967213, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=27.4193548387097, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789991, Length=265, Percent_Identity=27.9245283018868, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=26.0330578512397, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=28.7735849056604, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787792, Length=221, Percent_Identity=28.0542986425339, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786803, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788450, Length=203, Percent_Identity=25.1231527093596, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788472, Length=102, Percent_Identity=36.2745098039216, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787041, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=29.2452830188679, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787370, Length=202, Percent_Identity=24.2574257425743, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=26.605504587156, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=25.9574468085106, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=28.436018957346, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71992285, Length=249, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25146777, Length=259, Percent_Identity=26.2548262548263, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=226, Percent_Identity=31.4159292035398, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17541710, Length=236, Percent_Identity=25.4237288135593, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558664, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=259, Percent_Identity=23.9382239382239, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193208177, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=216, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=232, Percent_Identity=27.1551724137931, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641565, Length=251, Percent_Identity=28.6852589641434, Blast_Score=71, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30240; Mature: 30240
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGKSLTARALMKLLPSNAD CEEEEECEEEEEEHHHHHHHHHHCCHHCCCCCHHEEEECCCCCCHHHHHHHHHHCCCCCC IRADKLAFDGIDVLSASEKQMRQIRGKRAGFILQDPKYSLNPVKTMGAQIAEAWRAHKGG CCHHHHEECCHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC SKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRVMIAMMLAPDPELLIADEPTS CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCH ALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHFCDRVAVMYSGRVMEELKASELL HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KAEHPYTKGLLNCIPSLTHPRERLPVLNRDAAWSSQ HHCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGKSLTARALMKLLPSNAD CEEEEECEEEEEEHHHHHHHHHHCCHHCCCCCHHEEEECCCCCCHHHHHHHHHHCCCCCC IRADKLAFDGIDVLSASEKQMRQIRGKRAGFILQDPKYSLNPVKTMGAQIAEAWRAHKGG CCHHHHEECCHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC SKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRVMIAMMLAPDPELLIADEPTS CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCH ALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHFCDRVAVMYSGRVMEELKASELL HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KAEHPYTKGLLNCIPSLTHPRERLPVLNRDAAWSSQ HHCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]