| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is gno [H]
Identifier: 15889687
GI number: 15889687
Start: 2387681
End: 2388451
Strand: Direct
Name: gno [H]
Synonym: Atu2417
Alternate gene names: 15889687
Gene position: 2387681-2388451 (Clockwise)
Preceding gene: 159185208
Following gene: 15889688
Centisome position: 84.03
GC content: 63.55
Gene sequence:
>771_bases ATGGGCATTCTCCAGAAATTCTCTCTCGAAAACCGCACCGCCATCATCACCGGCAGCGGTCGCGGCCTCGGTTTCGAAAT CGCCAAAGGCTTCGCCGAGGCGGGCGCCCATGTCTGGCTGACCGGCCGTAACGCCGAGACGTTGCAACAGGCGGTCGACA CGCTGCGCAAGGCGGGCGGAAAGGCCGATTATGCAGCCTTCGATATTGCCGACACGGCTGCAGGAAGCGCGCTTGTCCGC CGCATCATGGATGAGGCCGGCCATCTCGATATCCTCGTCAACAATGTCGGCGCGCGCGACCGCCGCCCGCTTGCCGAATT TACCGACGACGACGTGCTGGAGCTCATCCGCACCGACCTCACCTCCTCCATCTCGCTGTCGCGTGATGCGGCTGAAGCCA TGAATGCCAACGGTTACGGCCGCATCATCACCATCACCTCCATTCTCGGCCATATCGTCCGGCCGGGTGATGCGATCTAT CCCGTCGCCAAACAGGGGCTGACCGGGCTGATGCGGGCGATTGCAGTGGAATATGGCGCGCGCGGCATCACCAGCAACGC CATTGCCCCCGGCATGTTCGCCACCGAAACCAATGCCGCCCTTGCCGAAAACCCTGACATGGTGGCCTTTGCCAAGCTGC GCGTACCGCTGGAGCGCTGGGGCAGACCCGATGAAATCGCCGGGGCTGCCCTGTTTCTCGCCAGCGACGCGGCCTCCTTC GTCAACGGCCACATATTGACGGTGGACGGCGGCATGTCGGTGCGGCTGTGA
Upstream 100 bases:
>100_bases GGGCCGGACACGCGACCTTTTCGCCCTCTGCCCGCCCGTCATATTCTTCCTTAGGCGCAAACTCGACGAAGTTGCAGCAC GTCAAGCAAGAAGGTGAGCG
Downstream 100 bases:
>100_bases GAACGACGAAACATCATTTTCGGAAAGGCGCTGGATCCTAGGCATGGCCGCACGGCAACGCATCATCCCCGTCAGGCGCG AATATAACCGCTGGGTCGCC
Product: gluconate 5-dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MGILQKFSLENRTAIITGSGRGLGFEIAKGFAEAGAHVWLTGRNAETLQQAVDTLRKAGGKADYAAFDIADTAAGSALVR RIMDEAGHLDILVNNVGARDRRPLAEFTDDDVLELIRTDLTSSISLSRDAAEAMNANGYGRIITITSILGHIVRPGDAIY PVAKQGLTGLMRAIAVEYGARGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLERWGRPDEIAGAALFLASDAASF VNGHILTVDGGMSVRL
Sequences:
>Translated_256_residues MGILQKFSLENRTAIITGSGRGLGFEIAKGFAEAGAHVWLTGRNAETLQQAVDTLRKAGGKADYAAFDIADTAAGSALVR RIMDEAGHLDILVNNVGARDRRPLAEFTDDDVLELIRTDLTSSISLSRDAAEAMNANGYGRIITITSILGHIVRPGDAIY PVAKQGLTGLMRAIAVEYGARGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLERWGRPDEIAGAALFLASDAASF VNGHILTVDGGMSVRL >Mature_255_residues GILQKFSLENRTAIITGSGRGLGFEIAKGFAEAGAHVWLTGRNAETLQQAVDTLRKAGGKADYAAFDIADTAAGSALVRR IMDEAGHLDILVNNVGARDRRPLAEFTDDDVLELIRTDLTSSISLSRDAAEAMNANGYGRIITITSILGHIVRPGDAIYP VAKQGLTGLMRAIAVEYGARGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLERWGRPDEIAGAALFLASDAASFV NGHILTVDGGMSVRL
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=28.125, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=29.0196078431373, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=27.5862068965517, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI4504505, Length=257, Percent_Identity=31.1284046692607, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=29.7959183673469, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=29.0322580645161, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=28.0155642023346, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI126723750, Length=263, Percent_Identity=27.3764258555133, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=26.1224489795918, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=26.7015706806283, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI32455239, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI5031765, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI59889578, Length=180, Percent_Identity=32.2222222222222, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=25.9109311740891, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=27.1739130434783, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI38424085, Length=171, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI4503301, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=29.3785310734463, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=36.6935483870968, Blast_Score=161, Evalue=4e-41, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=34.9206349206349, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=37.8048780487805, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=35.408560311284, Blast_Score=134, Evalue=8e-33, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=37.037037037037, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=33.469387755102, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=31.8897637795276, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=29.9180327868852, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=27.9527559055118, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=25.609756097561, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787526, Length=218, Percent_Identity=25.2293577981651, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.8897637795276, Blast_Score=124, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.4644194756554, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.0395256916996, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=31.7164179104478, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=28.996282527881, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=29.9595141700405, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.0610687022901, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=29.277566539924, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.735632183908, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=29.6296296296296, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=30.9160305343511, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.7878787878788, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=29.6747967479675, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=28.7822878228782, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=29.6577946768061, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17536025, Length=263, Percent_Identity=30.7984790874525, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=30.4832713754647, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=29.7397769516729, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=27.8225806451613, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=28.8, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=26.984126984127, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=28.8973384030418, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561272, Length=241, Percent_Identity=29.4605809128631, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=27.2373540856031, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17564282, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=25, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=25.0980392156863, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=26.615969581749, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203115, Length=200, Percent_Identity=26, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=23.4375, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71997099, Length=258, Percent_Identity=28.2945736434109, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=33.160621761658, Blast_Score=93, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=22.9838709677419, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=29.718875502008, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=29.4820717131474, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=29.3172690763052, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=29.7959183673469, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.5140562248996, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=29.6, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI18859837, Length=260, Percent_Identity=29.6153846153846, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24644337, Length=235, Percent_Identity=28.936170212766, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=26.2626262626263, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=24.4094488188976, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=23.7113402061856, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=26.0700389105058, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648944, Length=229, Percent_Identity=26.2008733624454, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357673, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641232, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007238, Length=170, Percent_Identity=25.8823529411765, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 27024; Mature: 26893
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILQKFSLENRTAIITGSGRGLGFEIAKGFAEAGAHVWLTGRNAETLQQAVDTLRKAGG CCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC KADYAAFDIADTAAGSALVRRIMDEAGHLDILVNNVGARDRRPLAEFTDDDVLELIRTDL CCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHH TSSISLSRDAAEAMNANGYGRIITITSILGHIVRPGDAIYPVAKQGLTGLMRAIAVEYGA HHHHHCCHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC RGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLERWGRPDEIAGAALFLASDAASF CCCCCCCCCCCCEECCCCCHHHCCCCEEEEHEEECCHHHCCCCCHHHHHHHHHHHHHHHH VNGHILTVDGGMSVRL HCCEEEEECCCCEECC >Mature Secondary Structure GILQKFSLENRTAIITGSGRGLGFEIAKGFAEAGAHVWLTGRNAETLQQAVDTLRKAGG CCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC KADYAAFDIADTAAGSALVRRIMDEAGHLDILVNNVGARDRRPLAEFTDDDVLELIRTDL CCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHH TSSISLSRDAAEAMNANGYGRIITITSILGHIVRPGDAIYPVAKQGLTGLMRAIAVEYGA HHHHHCCHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC RGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLERWGRPDEIAGAALFLASDAASF CCCCCCCCCCCCEECCCCCHHHCCCCEEEEHEEECCHHHCCCCCHHHHHHHHHHHHHHHH VNGHILTVDGGMSVRL HCCEEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]