Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889676
Identifier: 15889676
GI number: 15889676
Start: 2376492
End: 2376749
Strand: Reverse
Name: 15889676
Synonym: Atu2406
Alternate gene names: NA
Gene position: 2376749-2376492 (Counterclockwise)
Preceding gene: 159185201
Following gene: 159185200
Centisome position: 83.64
GC content: 65.12
Gene sequence:
>258_bases ATGGCGCTGGAGCTTCGGCCCAATTGCGAATGTTGCGACCGTGATCTTGCGCCCCATAGCCGGGATGCGATGATCTGCTC GTTCGAATGCACCTTTTGCGCCGATTGCGCGAGCGACGTGCTTCACGGTGCCTGCCCGAATTGCGGCGGCGAACTGGTCC GCAGGCCGGTCCGCCCGGCGGCAAAACTCGTTAACAACCCAGCGTCGACACGGCGCGTCCTGAAGGCCGAAGGCTGCGCA GCCGCGACTGCCGCCTGA
Upstream 100 bases:
>100_bases TGGCATTGCCGATATGATCCATGATGTGCAGGTGGAAGCGACCTTCCCCGACGGCACCAAGCTGGTGACCGTTCACGAAC CGATCCGCTGAGGGGATGAT
Downstream 100 bases:
>100_bases GACAGAAATTAAGGGGAGCCCCATGAAGCCAGGCGAAATCATTGCCGCAGAAGGCACCATCGAACTTAATGCCGGCCAGC CGACGGTGACGATCGAGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 85; Mature: 84
Protein sequence:
>85_residues MALELRPNCECCDRDLAPHSRDAMICSFECTFCADCASDVLHGACPNCGGELVRRPVRPAAKLVNNPASTRRVLKAEGCA AATAA
Sequences:
>Translated_85_residues MALELRPNCECCDRDLAPHSRDAMICSFECTFCADCASDVLHGACPNCGGELVRRPVRPAAKLVNNPASTRRVLKAEGCA AATAA >Mature_84_residues ALELRPNCECCDRDLAPHSRDAMICSFECTFCADCASDVLHGACPNCGGELVRRPVRPAAKLVNNPASTRRVLKAEGCAA ATAA
Specific function: Unknown
COG id: COG3813
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010696 - InterPro: IPR013083 [H]
Pfam domain/function: PF06906 DUF1272 [H]
EC number: NA
Molecular weight: Translated: 8993; Mature: 8862
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
11.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 14.1 %Cys+Met (Translated Protein) 11.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 13.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALELRPNCECCDRDLAPHSRDAMICSFECTFCADCASDVLHGACPNCGGELVRRPVRPA CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHH AKLVNNPASTRRVLKAEGCAAATAA HHHHCCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure ALELRPNCECCDRDLAPHSRDAMICSFECTFCADCASDVLHGACPNCGGELVRRPVRPA CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHH AKLVNNPASTRRVLKAEGCAAATAA HHHHCCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8121412; 11481430 [H]