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The map label for this gene is atxR [H]

Identifier: 15889561

GI number: 15889561

Start: 2256979

End: 2257695

Strand: Reverse

Name: atxR [H]

Synonym: Atu2285

Alternate gene names: 15889561

Gene position: 2257695-2256979 (Counterclockwise)

Preceding gene: 15889562

Following gene: 159185139

Centisome position: 79.45

GC content: 59.69

Gene sequence:

>717_bases
ATGGTGAAGACGGAGCGTCAGGCCAGACTATGCCGGGATCTGTCGGCCGCCGCCGACAAATCCCAATGGCTGGAGGCGCT
GCAGGAGGTCATGCATGCGTTTGGTTATGCCCATGTGACCCTCCTGAGGTTACCAGGTGGACAGAACGCCTTTGCTTTGC
CGTTGGTTGTTGAAAGCAGCCTGCCGGTCTGGGTCGTGAATGCGATGACCAAGGATGGTGCGCTTGGGGACTGTCCGGTC
ATCAAGCGTGGCGCCTCATCGATGATGCCGCAATATTGGTCGCTGGAAGACCCGGAGATGGCCTGCGGATCGCTGGTGGA
TGCGGTGAACTCGGTGGGCAGCATGGGCATTACGTCCGGTCTCATGGTGCCGGTGAATGGCATGTCCGGAAACCGGCATC
TGATGAATTTCGCAGGCGACCGCGATACCCTGCCGCAGGCATCTCTGAACGAACTTTGCATGATCGCGCTGCATGCGCTG
GAAACCTATGACCGCCTTTGCCGCGTCGCTTCGAAAGGGCCGTCGCCTTTGACGAAGCGGGAGCTCGATGTGGTGCGCTG
GACGGCGCAGGGGAAGACCTCGGTGGAGATCGCCGAGCTTCTCTCCATCTCGGAGCACACGGTCAATACCTACATGAACA
ACGCCATGCGCAAGCTCGATTGCGTCAACCGCACACAGCTGGTGGCGAAGACCATCCGTCTGCGGCTGATAGAGTAA

Upstream 100 bases:

>100_bases
GCTTTAGGTCAGTTGGTCCGCTTGTTATGAAGGTCGCCCCCCGTTTGACCCGCTTGCGTGTTTTTTGCTCCGGCCAGCCC
GGTATGGCGGCGGTGCGTGA

Downstream 100 bases:

>100_bases
GCCGGCCGGACAGCGGGCCGGCCTCCTTATCAACGGTCGAGAACCGAGCGAAGCTCGACGAGGTTCGAGCGCACCCGCAG
AACATAAAATCCCATGGTGG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MVKTERQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTKDGALGDCPV
IKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPVNGMSGNRHLMNFAGDRDTLPQASLNELCMIALHAL
ETYDRLCRVASKGPSPLTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLIE

Sequences:

>Translated_238_residues
MVKTERQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTKDGALGDCPV
IKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPVNGMSGNRHLMNFAGDRDTLPQASLNELCMIALHAL
ETYDRLCRVASKGPSPLTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLIE
>Mature_238_residues
MVKTERQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTKDGALGDCPV
IKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPVNGMSGNRHLMNFAGDRDTLPQASLNELCMIALHAL
ETYDRLCRVASKGPSPLTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLIE

Specific function: Functions as a BHL-responsive transcriptional regulator [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=51, Percent_Identity=52.9411764705882, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26088; Mature: 26088

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTERQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESS
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHEEEEEECCCCCCCEEEEEEECCC
LPVWVVNAMTKDGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSG
CCEEEEEECCCCCCCCCCHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
LMVPVNGMSGNRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKR
CEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLIE
HHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKTERQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESS
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHEEEEEECCCCCCCEEEEEEECCC
LPVWVVNAMTKDGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSG
CCEEEEEECCCCCCCCCCHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
LMVPVNGMSGNRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKR
CEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLIE
HHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]