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The map label for this gene is sco1

Identifier: 15889357

GI number: 15889357

Start: 2034093

End: 2034701

Strand: Reverse

Name: sco1

Synonym: Atu2073

Alternate gene names: NA

Gene position: 2034701-2034093 (Counterclockwise)

Preceding gene: 159185038

Following gene: 15889356

Centisome position: 71.6

GC content: 56.98

Gene sequence:

>609_bases
ATGAGAAATATTCGCATCGTATTGTGGGCCGTGGTGGTCGTTCTTGCCGGTGTCGTCAGCTGGCTGACGATCGAGATGAC
GAAAACCCGCGAGGAGATGGTGGAAACGGCCTATGGCGTGCCTTTCGCGCTGACCGCGCAAAATGGCCAGCCGATCACCG
AAAAGGCGTTTCAGGGCAAACCGACGGCGCTGTTCTTCGGCTTCACCCATTGCCCGGAAGTCTGCCCGACCACGCTGTTC
GAGCTGAACGGCTGGATGGAGAAGGTCGATCCGGCCGGTGACAAGCTGCAAGCCTATTTCGTATCCGTCGATCCCGAGCG
CGATACGCCTGAGATCATGCAGCAATATGTCTCCAACGTCTCGAAGCGGATCACCGGCATCACCGGCCCGGCCGACAAGA
TTGCCGAAACGCTGAAAGGCTATCGCATCTATGCCAAGAAGGTGCCGGTGGATGAAAAGGATCCGAATGGCGATTACACC
ATGGATCATACGGCGTCCGTGATCCTGCTTGATGCCAACGGCCGCTTTGCGGGAACGATCGCTTATGGCGAAAACCCTGA
TGTCGCCGAGCAGAAGCTCCAGAATCTTCTTAAAGGCGCGAAGGCATAA

Upstream 100 bases:

>100_bases
AGCCCAAATACGGCCAGTTGATTTGCCGTTGCCGCTGCCCTTCGCTATCAGTCGGGCAGGGCCTGCGATATGCCGCCGGC
TTTCGGGGTAGGATTGGACA

Downstream 100 bases:

>100_bases
TTACGCCGGGCTTATTGGACTGATGAAGGTTTTGTGGCAAAGGCAGACTGAGTAGCCCTAGCCAGAGAAAGCAGCCGCCG
TGAGCGAAATCCGCCTCTAT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRNIRIVLWAVVVVLAGVVSWLTIEMTKTREEMVETAYGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLF
ELNGWMEKVDPAGDKLQAYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNGDYT
MDHTASVILLDANGRFAGTIAYGENPDVAEQKLQNLLKGAKA

Sequences:

>Translated_202_residues
MRNIRIVLWAVVVVLAGVVSWLTIEMTKTREEMVETAYGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLF
ELNGWMEKVDPAGDKLQAYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNGDYT
MDHTASVILLDANGRFAGTIAYGENPDVAEQKLQNLLKGAKA
>Mature_202_residues
MRNIRIVLWAVVVVLAGVVSWLTIEMTKTREEMVETAYGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLF
ELNGWMEKVDPAGDKLQAYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNGDYT
MDHTASVILLDANGRFAGTIAYGENPDVAEQKLQNLLKGAKA

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=175, Percent_Identity=33.1428571428571, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI281182722, Length=175, Percent_Identity=33.1428571428571, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI281182716, Length=175, Percent_Identity=33.1428571428571, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI153791313, Length=175, Percent_Identity=33.1428571428571, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI4759068, Length=140, Percent_Identity=36.4285714285714, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=154, Percent_Identity=29.8701298701299, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6319498, Length=187, Percent_Identity=36.3636363636364, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=188, Percent_Identity=31.3829787234043, Blast_Score=106, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19920710, Length=165, Percent_Identity=32.7272727272727, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22302; Mature: 22302

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIRIVLWAVVVVLAGVVSWLTIEMTKTREEMVETAYGVPFALTAQNGQPITEKAFQGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC
PTALFFGFTHCPEVCPTTLFELNGWMEKVDPAGDKLQAYFVSVDPERDTPEIMQQYVSNV
CCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
SKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNGDYTMDHTASVILLDANGRFAGTI
HHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCEEEEEEECCCCEEEEE
AYGENPDVAEQKLQNLLKGAKA
EECCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRNIRIVLWAVVVVLAGVVSWLTIEMTKTREEMVETAYGVPFALTAQNGQPITEKAFQGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC
PTALFFGFTHCPEVCPTTLFELNGWMEKVDPAGDKLQAYFVSVDPERDTPEIMQQYVSNV
CCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
SKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNGDYTMDHTASVILLDANGRFAGTI
HHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCEEEEEEECCCCEEEEE
AYGENPDVAEQKLQNLLKGAKA
EECCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]