Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is artJ [H]
Identifier: 15889178
GI number: 15889178
Start: 1860027
End: 1860800
Strand: Direct
Name: artJ [H]
Synonym: Atu1879
Alternate gene names: 15889178
Gene position: 1860027-1860800 (Clockwise)
Preceding gene: 159184961
Following gene: 15889179
Centisome position: 65.46
GC content: 58.79
Gene sequence:
>774_bases ATGCCTATTTCCACCCGTCTGCTCGCAGCCGTATCGATTGCCGCCATCTCGCTGTTGTCAGGCGCAGCCCTTGCGCAGGA CAAGATCGTCATCGGCACCGAAGGCGCCTACCCGCCCTTCAACAATCTCGAAGCCGACGGCACGCTGACCGGCTTCGACA TCGACATCGCCAAGGCGCTGTGCGAACAAATGAAGGCCGAATGCACCTTCGTCACCAATGACTGGGACGGCATCATTCCC GCCCTGCAGGCCAAGAAGTTCGACGCCATCATCGCGTCCATGTCGATCACGCCGGAACGCCTCCAGAAGGTCGATTTCTC CAAGAAATATTACAACACCCCGCCGGCAATCGCCGTGCCGAAGGATTCGCCGATCAAGTCCATCGACGATCTCAAGGGCA AGTCGCTCGGCGCGCAGGGTTCCACCACACACTCCAACTATGCCGAAAAGCATTTCCCGGATGCCGACGTGAAGATGTAT CCGACCGCCGACGAATATAAGCTCGACATCGCCAATGGCCGCATCGACGCCGTCATCGACGATATCGTCGTGCTGTCGGA GTGGCTGAAGACCGACGCCGGCAAGTGCTGCAAGATCCTGACGCCGCTCAAGGTCGATCCCGAGATCAACGGCAATGGCG CAGGCATTGCCGTGCGCAAGGGCGACACGGCGCTGGCCGACAAGTTCACGGCCGCAATCGCCGGTATCCGCGCCAGCGGC AAGTATCAGGAGATCAACAAAAAATACTTCGATTTCGACGTTTACGGCGATTAA
Upstream 100 bases:
>100_bases CCACAGGCGGTATCCTCCGTTCTGCCGCGCCCAGCGCCCATGGCATCCGCACTGAAAATAACAACAGACTGCGGATGAAC GACCAACAGAGAGGATCGAA
Downstream 100 bases:
>100_bases GCCGGTTCGATCTGTTGAAATCTCGTGGCGGAAGGCTTGCCCTTCCGCCATTTTTGTTTGAAAACGTCACTATAACAATC ACGGCGGCTTAAGACCGCAG
Product: ABC transporter, substrate binding protein (amino acid)
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MPISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKALCEQMKAECTFVTNDWDGIIP ALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVPKDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMY PTADEYKLDIANGRIDAVIDDIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASG KYQEINKKYFDFDVYGD
Sequences:
>Translated_257_residues MPISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKALCEQMKAECTFVTNDWDGIIP ALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVPKDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMY PTADEYKLDIANGRIDAVIDDIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASG KYQEINKKYFDFDVYGD >Mature_256_residues PISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKALCEQMKAECTFVTNDWDGIIPA LQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVPKDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMYP TADEYKLDIANGRIDAVIDDIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASGK YQEINKKYFDFDVYGD
Specific function: Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Binds L-arginine with high affinity [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=245, Percent_Identity=40.4081632653061, Blast_Score=195, Evalue=2e-51, Organism=Escherichia coli, GI1788649, Length=257, Percent_Identity=40.0778210116732, Blast_Score=178, Evalue=4e-46, Organism=Escherichia coli, GI1787088, Length=245, Percent_Identity=38.3673469387755, Blast_Score=177, Evalue=6e-46, Organism=Escherichia coli, GI1788648, Length=232, Percent_Identity=41.3793103448276, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1787031, Length=243, Percent_Identity=32.0987654320988, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1788228, Length=229, Percent_Identity=31.8777292576419, Blast_Score=119, Evalue=2e-28,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR005768 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 27643; Mature: 27512
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKAL CCCCHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHH CEQMKAECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVP HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCEECC KDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMYPTADEYKLDIANGRIDAVID CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCEEEEECCCCHHHHHH DIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASG HHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC KYQEINKKYFDFDVYGD CHHHHCCEEEEEEECCC >Mature Secondary Structure PISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKAL CCCHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHH CEQMKAECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVP HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCEECC KDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMYPTADEYKLDIANGRIDAVID CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCEEEEECCCCHHHHHH DIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASG HHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC KYQEINKKYFDFDVYGD CHHHHCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501075; 8905232; 9278503; 9298646; 9600841 [H]