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The map label for this gene is ycbB [H]

Identifier: 15888928

GI number: 15888928

Start: 1597528

End: 1599456

Strand: Reverse

Name: ycbB [H]

Synonym: Atu1615

Alternate gene names: 15888928

Gene position: 1599456-1597528 (Counterclockwise)

Preceding gene: 15888931

Following gene: 159184838

Centisome position: 56.29

GC content: 62.0

Gene sequence:

>1929_bases
GTGCTGGGTGCTACGAGGATCAAATTGCAAGTCACATCTGGAAAATCATCGGCAGCACTGGTGCTGGCTCTCGGTCTTTC
CGTTTCCACCGCTCTTCCCGGCAGCGCCGGCGCGGTGACGCTGATGGACCTCCTGCGCGGCGGCCCGGGCAAGATCGCGC
GTGATCGCGGTGAACTGCCGCCGGCCGGCATCGTTACCTCGCCATCCGGCTCCGGATCAAGCGCCGGACAAAGTGCGGAT
GCCTCCGATCCCGAGCCTCTGCCGCGCGTTTCCGGCCCGCGTTATTACGATTACAAGGCGGATGCGGCTCGTGTGGTAAA
CACGGCGAATTTCGGCGAAGGCCTTGCCAACCTGAAGTTCAGCGCCACGCCTGAGATCGGCAAGGCACTGGAGGCCTATT
ACGGCGCGGGCGGCAAGACGCTGTGGGTTTCCGGCGGCGAACTGACCGAGCGCGCCAACGCCGTCCTCGCTTTCTTCGAG
ACGGTTGGCGAGAGCGGCCTCGATCCGGCCGATTACAGCATTTCCGCACCGGCAAGGGATGTGACCGCGAGCATCAGCAA
CAATGCTGCCGGCACGACTGCGACCGGCACGCCGGTCGAAACGGCCTCCGTATCGACCTCGGATTCTTATCAGCGGGCCC
AGATGCAGTTCGAACTGGCGCTGTCGGCCAAGGTTCTGGCCTATGTGCAGGATACAACGCGTGGCCGCGTCGATCCGAAC
CGGTTGTCTGGCTACCATGATTTCAAGCGCAAGACCGTCAACCTTGCGCCGGTGCTGAAGCTTGCAGGCCTCAGCCCCGA
CGTCGCCGCCTATCTGCGCAGTCGCGAACCGTCGAGCGCCGAATACCTGGCGTTGAAGGCGGAACTTGCCCGCCTGCGCG
GCGAGGGCGATACGGCTCACACTGTTCGCGTTCCGGCTGATCTGGTGCTGAAGCCCGGCAATAGCAGCGCCGATATGGCC
AGTGTCGTCAAGGCGATCGAGCATCGCGCTTCGCCGGCCTTCAAGGCCGAACACGCGGCGATCATGTCCGCTTACCAGCA
GACGCCGGATTATACGCCTGATCTCGTCGATTTGGTGAAGGCGTTCCAGAGCGAAAACGGCCTGAAGCCGGATGGCGTGA
TCGGCCGTGCGACCGTGCGCGCCATGGTCGGCGAAAGCAACGATGCCAAGATTGCCAAGGTGCAGGTGGCCATGGAGCAG
GTCCGCTGGCTGCCGGCAGATCTCGGCCAGCGTTACGTCTTCATCAACCAGCCCGCTTTCATGGCCTATTATCACAATGA
CGGCGTGGAACAGTTCGGCATGAAGGTGGTTGTCGGTTCCAAGGCGAACCAGACCTATTTCTTCCAGGACGAAATCCAGA
CCGTCGAGTTCAATCCCTATTGGGGCGTGCCGCAGTCGATCATCGTCAACGAGATGCTGCCGAAGCTGCGCCGCGACCCG
TCCTACCTCGACCGGTTGGGTTACGAAGTACAGGTTGGCGGCCGTGCGGTCTCATCCAGCAGCGTCAATTGGTACGGCTC
AACCAACGCCGTTTCCGTGCGTCAGCCGCCGAGCAGCGACAATGCGCTGGGCGACCTGAAGATCCTGTTCCCTAACGCGC
ATGCGATCTACATGCATGACACGCCGGCCAAGAGCTTCTTCAACCGCGACATGCGGGCGTTGAGCCACGGCTGTATCCGT
CTGGTCGATCCGCGCCGCATGGCTGCTGCCGTTCTTGGCTCCAGCGTCGACAAGGTCAATGAGCAGATTGCAGCGGGTAA
GAACCGCGCAGTGCAGGTGCCGGAGAAGGTTCCGGTCTATGTCGCTTATTTCACGGCTTGGCCGGACAAGGACGGTAAGG
TGCAGTTCTTCGACGACGTCTATGACCGCGACAGCTATGTGCAGAAGGCATTCGCCGTGACGACAAAAGCGCGGGCCGCG
TCGATCTGA

Upstream 100 bases:

>100_bases
AGGTTCATTTCGGCACGGTTGTGGGCTTTAGGCGTTTTCTTTTCAACGGGCCGTCTATCGGCTAGACAGGCATGAAACTG
ATGCCCGCCGTTTTCGGGCG

Downstream 100 bases:

>100_bases
TTGGAGTACAATCGAGAGAGAAAGCGCACGAAACGGCGCTGAATTCCCTCTTCCGTCATGCTCGGGCTTGTCCCGAGCAT
CTGCAACGTCTCAATTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELPPAGIVTSPSGSGSSAGQSAD
ASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKFSATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFE
TVGESGLDPADYSISAPARDVTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPN
RLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAHTVRVPADLVLKPGNSSADMA
SVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQ
VRWLPADLGQRYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDP
SYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIR
LVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAA
SI

Sequences:

>Translated_642_residues
MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELPPAGIVTSPSGSGSSAGQSAD
ASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKFSATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFE
TVGESGLDPADYSISAPARDVTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPN
RLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAHTVRVPADLVLKPGNSSADMA
SVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQ
VRWLPADLGQRYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDP
SYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIR
LVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAA
SI
>Mature_642_residues
MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELPPAGIVTSPSGSGSSAGQSAD
ASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKFSATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFE
TVGESGLDPADYSISAPARDVTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPN
RLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAHTVRVPADLVLKPGNSSADMA
SVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQ
VRWLPADLGQRYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDP
SYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIR
LVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAA
SI

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=345, Percent_Identity=30.4347826086957, Blast_Score=161, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68770; Mature: 68770

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELP
CCCCEEEEEEEECCCCCEEEEEEECCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PAGIVTSPSGSGSSAGQSADASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKF
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHEECCCCCCCHHCCEE
SATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFETVGESGLDPADYSISAPARD
CCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
VTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPN
HEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEHHHHHEEEEEHHCCCCCCCHH
RLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAH
HHCCHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCE
TVRVPADLVLKPGNSSADMASVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVK
EEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
AFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVRWLPADLGQRYVFINQPAF
HHHHCCCCCCCCEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHCCCEEEEEECCEE
MAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDP
EEEEECCCHHHCCCEEEECCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCH
SYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHD
HHHHHCCCEEEECCEEECCCCEEEECCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEC
TPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVY
CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCEE
VAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAASI
EEEEEECCCCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELP
CCCCEEEEEEEECCCCCEEEEEEECCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
PAGIVTSPSGSGSSAGQSADASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKF
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHEECCCCCCCHHCCEE
SATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFETVGESGLDPADYSISAPARD
CCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
VTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPN
HEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEHHHHHEEEEEHHCCCCCCCHH
RLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAH
HHCCHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCE
TVRVPADLVLKPGNSSADMASVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVK
EEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
AFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVRWLPADLGQRYVFINQPAF
HHHHCCCCCCCCEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHCCCEEEEEECCEE
MAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDP
EEEEECCCHHHCCCEEEECCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCH
SYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHD
HHHHHCCCEEEECCEEECCCCEEEECCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEEC
TPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVY
CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCEE
VAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAASI
EEEEEECCCCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]