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The map label for this gene is ybiO [H]

Identifier: 15888863

GI number: 15888863

Start: 1531090

End: 1533165

Strand: Direct

Name: ybiO [H]

Synonym: Atu1541

Alternate gene names: 15888863

Gene position: 1531090-1533165 (Clockwise)

Preceding gene: 15888862

Following gene: 159184807

Centisome position: 53.88

GC content: 59.63

Gene sequence:

>2076_bases
ATGAATGTTTTATCCCGCCTTTTGAGGTTCTGCGCCCGCTTGCCGGCTCTCTGGCTGGCCTTGTGCCTGTTTTCTTCCTC
CACCGTCTTCGCCCAGACTCCCACGCCCGCAAATCCGGCAAATCAGACCACGGAACAGAAAGTCGACCAGCTCCTCAACC
TCATGGGGCAGGACGATGTTCGCAGCCTTCTGGCGCAACGGCTGTCCGATACGTCTGACGTGGCCGCCCCTGATGACGGC
AACATGAGCGTGCTCGACCAATGGGCAAGCAAGCGGCGCGAACATCTGGCACGGCTCGCCGGTGATGCCCCGGCGATTCC
CGGGGAATTGTCGAAGGCGGTAACAACACTCGTCAACGAAATCGAGGCTTATGGTCTTCTCCGCTTCCTCGCCCATGTCG
CGCTGCTTTTCGGAGTGGGCATCACGGCCGGGATCGCGACCTACTGGATAACCGCCGCCCGCACCGCAAGCGCCCTGCCC
GGCAATGTCGCCGAATTTGCGCTGGCGACAGCCTCGAGACGCCTGCTGCCCGTGGTGGGATATGGCCTTTCGGCGACGAT
CATGTTTTTCACCATTCCGTTGCCGCCGCTCCTGAGCGCGGTGCTGCTTCCGTGGCTTGCGGTCAGCGTCGGCCTTCCGC
TCGTGAAAGCGGTCGTCGATCTGTTGAAACGGGTCATCAATGACGGTCTGAATTCACGGCGCCAATTCTGGCTCACACGC
TCTCTCGATCTCCTGGCAGTGGCGATGGTGTGCTGGGCCGCGCTGCGCATGCTTGTCAGCCTCGGGGTGACGGCTGCCGC
AGTCAAACTCATCTCCTATGCGATGATCGCGGCACTCTTTGCCCTTGGCATCTATTTTATCTGGCGCCAGCCGCAGGCGG
ACGCGAATACCGAACGCCGGCGGTCGCTGGATGTGGCCTTCACCTTTTACCTGTTCATCCTGTTTGCCGTCTGGATCGCG
GGTGCCGGCGTATTTTTCTGGCTGGGATTTTTTGCGCTGGTTCTTCCCGGTGCCGTCGGCACGCTGGGAATAGCGGCGCG
AAAAACCGCGACCGCGATGGGCGGCTATTCCGAAACGGACTTCCGCCCGGTTCTCGCGCAACGCAGTGTCCGGCTGCTGG
TGCTGGGCGCCGCGGTCATATGGCTCCTGTTCCTCATTCGAAACCATCCGGGCGCGCTTCCGGGCGGATCGACCGTGAGC
GCGATGTTCACGGGCTTGCTGCATGGTATTCTGGTCCTGCTCTTTGCCGACCTCTTCTGGGTGGCGATCAAGACGGTGAT
TTCGCGGCGGCTGGAAATGAATGCCCCGGCGGCGAGCGAGCATGGCGTGCCTGCCTCGGACGACAGATTGCAGACAATCC
TGCCGATCCTGCGCAACATGCTGGGAATCCTGATCAGCGCCGTCAGCGTCATGACGGTTCTCTCCGAACTTGGGGTCGAC
ATAGGCCCCCTGCTCGCCTCCGCCGGGATTTTCGGGATCGCCATCGGGTTCGGTTCGCAGACGCTGGTAAAGGACATCAT
CAGCGGTGTCTTCTACATGATCGACGATGCTTTCCGCGTGGGTGAATATATTCAGAGCGGTTCATACAAGGGAACCGTGG
AGTCCTTCAGCATTCGCTCGGTGAAACTGCGCCACCATCGCGGACCGATCTATACCGTGCCCTTCGGATCGCTCGGCGCT
GTCGAAAACATGAGCCGCGACTGGTCGATCGACAAGTTTCTCGTCACCGTTGCCTTTGATACCGACCTCACAAAAGTGAA
ATCGATTACCCGCGAAATCGGCAAGGCATTGAAGGATGACCCGGAATTCGGGCCGATGCTCATCGAGACGGTCAAGCTCA
AGGGTGTCGAACAGTTCGGAGACTACGGCATGACGCTCGGTTTCGGCATGATGGTGAAACCAAACGGTCAGCAATCGATC
ATCCGCCGAAAAGCCTATTCGATGCTGAAGGATGCCTTTGAGCAAAACGGGATCGAATTCGCGACGATGAGCGGCACCTC
TCCCGGAAAAACAAAGTCAGGTCCACAACCGCCTGAGGAGCCGCCATCGGAAATGACCGATAATTTCAGGCCCTAG

Upstream 100 bases:

>100_bases
ATCTCCTCAGCGACTCCTTTGACGACGCATTGGCCGAAGCGATGAAACTGGCCAAATCACGGGAGGCCCGGCATCTTCCG
GGCTGGTGTGGGGTTGAGGA

Downstream 100 bases:

>100_bases
TGGACACAAACCGAACAGCTCCTGAAAAGGTTAGGCTCGGGGCCGGCTCCCGTTTTCAGCCCTTCATCTTCAGCGGCAGC
CCGGCGGCGACAAAATAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 691

Protein sequence:

>691_residues
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDVRSLLAQRLSDTSDVAAPDDG
NMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNEIEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALP
GNVAEFALATASRRLLPVVGYGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERRRSLDVAFTFYLFILFAVWIA
GAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETDFRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVS
AMFTGLLHGILVLLFADLFWVAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRSVKLRHHRGPIYTVPFGSLGA
VENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDDPEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSI
IRRKAYSMLKDAFEQNGIEFATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP

Sequences:

>Translated_691_residues
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDVRSLLAQRLSDTSDVAAPDDG
NMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNEIEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALP
GNVAEFALATASRRLLPVVGYGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERRRSLDVAFTFYLFILFAVWIA
GAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETDFRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVS
AMFTGLLHGILVLLFADLFWVAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRSVKLRHHRGPIYTVPFGSLGA
VENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDDPEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSI
IRRKAYSMLKDAFEQNGIEFATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP
>Mature_691_residues
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDVRSLLAQRLSDTSDVAAPDDG
NMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNEIEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALP
GNVAEFALATASRRLLPVVGYGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERRRSLDVAFTFYLFILFAVWIA
GAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETDFRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVS
AMFTGLLHGILVLLFADLFWVAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRSVKLRHHRGPIYTVPFGSLGA
VENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDDPEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSI
IRRKAYSMLKDAFEQNGIEFATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=501, Percent_Identity=28.3433133732535, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1789291, Length=142, Percent_Identity=32.3943661971831, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 74824; Mature: 74824

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHH
RSLLAQRLSDTSDVAAPDDGNMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNE
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALPGNVAEFALATASRRLLPVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHC
YGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERR
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RSLDVAFTFYLFILFAVWIAGAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
FRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVSAMFTGLLHGILVLLFADLFW
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRS
HHHHHHHCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH
VKLRHHRGPIYTVPFGSLGAVENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDD
HHHHHCCCCEEEECCCCCCHHHHCCCCCCHHHEEEEEEECCHHHHHHHHHHHHHHHHCCC
PEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSIIRRKAYSMLKDAFEQNGIEF
CCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCEE
ATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP
EEECCCCCCCCCCCCCCCCCCCHHHCCCCCC
>Mature Secondary Structure
MNVLSRLLRFCARLPALWLALCLFSSSTVFAQTPTPANPANQTTEQKVDQLLNLMGQDDV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHH
RSLLAQRLSDTSDVAAPDDGNMSVLDQWASKRREHLARLAGDAPAIPGELSKAVTTLVNE
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IEAYGLLRFLAHVALLFGVGITAGIATYWITAARTASALPGNVAEFALATASRRLLPVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHC
YGLSATIMFFTIPLPPLLSAVLLPWLAVSVGLPLVKAVVDLLKRVINDGLNSRRQFWLTR
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLDLLAVAMVCWAALRMLVSLGVTAAAVKLISYAMIAALFALGIYFIWRQPQADANTERR
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RSLDVAFTFYLFILFAVWIAGAGVFFWLGFFALVLPGAVGTLGIAARKTATAMGGYSETD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
FRPVLAQRSVRLLVLGAAVIWLLFLIRNHPGALPGGSTVSAMFTGLLHGILVLLFADLFW
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAIKTVISRRLEMNAPAASEHGVPASDDRLQTILPILRNMLGILISAVSVMTVLSELGVD
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGPLLASAGIFGIAIGFGSQTLVKDIISGVFYMIDDAFRVGEYIQSGSYKGTVESFSIRS
HHHHHHHCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH
VKLRHHRGPIYTVPFGSLGAVENMSRDWSIDKFLVTVAFDTDLTKVKSITREIGKALKDD
HHHHHCCCCEEEECCCCCCHHHHCCCCCCHHHEEEEEEECCHHHHHHHHHHHHHHHHCCC
PEFGPMLIETVKLKGVEQFGDYGMTLGFGMMVKPNGQQSIIRRKAYSMLKDAFEQNGIEF
CCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCEE
ATMSGTSPGKTKSGPQPPEEPPSEMTDNFRP
EEECCCCCCCCCCCCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]