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The map label for this gene is yecS [H]

Identifier: 15888723

GI number: 15888723

Start: 1391987

End: 1392640

Strand: Reverse

Name: yecS [H]

Synonym: Atu1397

Alternate gene names: 15888723

Gene position: 1392640-1391987 (Counterclockwise)

Preceding gene: 159184744

Following gene: 15888722

Centisome position: 49.01

GC content: 58.56

Gene sequence:

>654_bases
ATGTCCACATTCGGTTGGCCTGAATTTCTTTTCCTGCTTCGTGGGGCCGGCTGGTCCATCGTCCTGACCGCCATTGCCTT
CAGCATCGGCTCGCTGACGGGCGGCTTCTTCGCCATCATGCGGCTTTCGCAATATGGATCGGTCCGCAACGTCGCAGCAG
GTTACATCACCGTCATTCAGTCGATACCGGTGCTGATGATCCTGTTCATGTCCTATTACGGGTTGACGCTGTTCGGGTTC
GAAATACCGCCGCTGCTCGCCGCATCGGTGTCCCTGTCGGTCTATGTTTCGGCCTATCTGGCGGAAATCTGGCGCGGCTC
CATCCAGGCGGTGCCAAAGCCGCAATGGGAGGCCTCGGCCTCGCTGGCGCTCACGCGTTTCCAGCAATATCGCTATGTCA
TCCTGCCGCAGGCCCTTCGGCTTTCCCTGCCTCCGACGGTGGGGTTCCTTGTCCAGCTCGTCAAGAACACCTCCATCGTA
TCGGTGGTCGGCTTCGTGGAACTCTCCCGCGCAGGCCAGCTCGTCAACAATGCGACGTTCAGACCCTTCCAGGTGTTTTT
CGTCGTCGCTCTTCTTTATTTCGCGATCTGCTTCCCGCTATCGCGCCTCAGCCGCCATCTCGAAAGGGTTCTCCATGTCG
GTCGTAACAATTGA

Upstream 100 bases:

>100_bases
CGCTGGCGCTGAAAATCATTCTCGCATGGTTCGGTCACTGGCTGTTCCGCCGCCGCGTCAAGGTTTTCTCCCCGATGACC
GTCCAGGAAGGAATTGCCTG

Downstream 100 bases:

>100_bases
TCAGGTGCACAAGCGTTATGGCGCCCTCGAAGTTCTGAAGGGTGTATCGCTGAACGTCGAGGCGGGACAGGTCGTCGCCA
TCATCGGGCGCAGCGGCTCC

Product: ABC transporter, membrane spanning protein (amino acid)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSTFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQSIPVLMILFMSYYGLTLFGF
EIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASASLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIV
SVVGFVELSRAGQLVNNATFRPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRNN

Sequences:

>Translated_217_residues
MSTFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQSIPVLMILFMSYYGLTLFGF
EIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASASLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIV
SVVGFVELSRAGQLVNNATFRPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRNN
>Mature_216_residues
STFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQSIPVLMILFMSYYGLTLFGFE
IPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASASLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIVS
VVGFVELSRAGQLVNNATFRPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRNN

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=202, Percent_Identity=39.6039603960396, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI87082239, Length=192, Percent_Identity=36.9791666666667, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787030, Length=211, Percent_Identity=33.6492890995261, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=30.0448430493274, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788646, Length=207, Percent_Identity=29.951690821256, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786874, Length=192, Percent_Identity=28.6458333333333, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787087, Length=213, Percent_Identity=23.943661971831, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994930, Length=130, Percent_Identity=37.6923076923077, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=26.7326732673267, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24083; Mature: 23952

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQ
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SIPVLMILFMSYYGLTLFGFEIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHH
SLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIVSVVGFVELSRAGQLVNNATF
HHHHHHHHHHHHEEECHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
RPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SIPVLMILFMSYYGLTLFGFEIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHH
SLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIVSVVGFVELSRAGQLVNNATF
HHHHHHHHHHHHEEECHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
RPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]