Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 15888641

GI number: 15888641

Start: 1306854

End: 1307333

Strand: Reverse

Name: yqgF [C]

Synonym: Atu1316

Alternate gene names: 15888641

Gene position: 1307333-1306854 (Counterclockwise)

Preceding gene: 17935221

Following gene: 15888634

Centisome position: 46.01

GC content: 63.96

Gene sequence:

>480_bases
ATGGCGACACTCACCATCGAGGAACTGGCACAGACGCTGCAGCCCGCACAGGCGATTGCCGGCCTCGACCTCGGCACGAA
GACCATCGGGCTTGCCATGTCGGACCTCTCGCGTCGTTTCGCGACGCCGCGTCCGGTGATCAAGCGGGTGAAATTCACGC
AGGATGCGCAGGTGCTGCTGGCTTTTGCCGAAAAGGAGAAGGTTGCCGCCTTCGTCATCGGCCTGCCGATAAATATGGAC
GGATCAGCCGGACCACGCGCGCAGGCGACGCGCGCCTTCGTGCGCACCATGGGCGAAAAAACCGCCCTGCCCTTTATTTA
CTGGGATGAGCGGCTTTCAACCGTCGCGGCAGAGCGCGCGCTTCTGGAAATGGACGTCTCACGCGCCAAGCGGGCCGAAC
GCATCGATTCGGCGGCCGCGAGTTTCATTCTTCAGGGCGCGCTGGACAGGCTTTCCGCGCTGACCCGCGCGGCCGACTGA

Upstream 100 bases:

>100_bases
TGACCGACAATCCCGAAGAGATCGATTGCAGGCATGATGCGGTCAAGGGTCTGGTGCTGCGCACCGAATTCGTCCGTAAA
AGATAAAGGCAGCACGCGAC

Downstream 100 bases:

>100_bases
CGGCCCTGCCACCAGGCGGCGATCTGCTTTCTCTTGCGGTATGCAAGGATCGCAAAAACGATCAGGCTATCGACCGCTAT
GGCGCGTGCCACCATTGGCG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLLAFAEKEKVAAFVIGLPINMD
GSAGPRAQATRAFVRTMGEKTALPFIYWDERLSTVAAERALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAAD

Sequences:

>Translated_159_residues
MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLLAFAEKEKVAAFVIGLPINMD
GSAGPRAQATRAFVRTMGEKTALPFIYWDERLSTVAAERALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAAD
>Mature_158_residues
ATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLLAFAEKEKVAAFVIGLPINMDG
SAGPRAQATRAFVRTMGEKTALPFIYWDERLSTVAAERALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAAD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=129, Percent_Identity=32.5581395348837, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_AGRT5 (Q8UFT1)

Other databases:

- EMBL:   AE007869
- PIR:   AD2738
- PIR:   B97519
- RefSeq:   NP_354322.1
- ProteinModelPortal:   Q8UFT1
- SMR:   Q8UFT1
- STRING:   Q8UFT1
- GeneID:   1133354
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1316
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q8UFT1
- ProtClustDB:   PRK00109
- BioCyc:   ATUM176299-1:ATU1316-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17205; Mature: 17074

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL
CCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTMGEKTALPFIYWDERLSTVAAERA
HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHCCCEEEHHHHHHHHHHHHH
LLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL
CEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTMGEKTALPFIYWDERLSTVAAERA
HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHCCCEEEHHHHHHHHHHHHH
LLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194