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The map label for this gene is ycbB [H]

Identifier: 15888502

GI number: 15888502

Start: 1158423

End: 1159754

Strand: Direct

Name: ycbB [H]

Synonym: Atu1164

Alternate gene names: 15888502

Gene position: 1158423-1159754 (Clockwise)

Preceding gene: 15888501

Following gene: 159184645

Centisome position: 40.77

GC content: 61.49

Gene sequence:

>1332_bases
ATGACAAAGAAATCCGTTTCCGATTCCGTATCGCGCCGTGCGCTTCTGCGTTCGGCCGTTTCCGTTGGTGTTGCCGCGCT
TGCCGCGCCGGCCTTGGCGCAGAACGCGCTCAACGATCTCATGGGCTCTTCGCGCCGCGGCAACTGGGATGACCAGTTCG
ACGCCAATACCTCGCGTTCGGCGGTGGGTGTCGTTTCCAACAACCCGGTACTCGGACGGGAAGCGCCTGTCTACATGCAG
CAGGCGATCATGCAATATCAGCAGATCGTGCAGAATGGCGGCTGGCCGGATGTACCCACTTCCCAGCAGCGTCTCCAGAT
CGGCGTTTCCGACCCTTCCGTGCAGGCGCTGCGTCAGCGACTGATGGTATCGGGCGACCTGCCGCGTGAAGCCGGCATTT
CCAGCGCCTTCGATTCCTATGTCGATGGCGCTCTGAAGCGTTTCCAGGCGCGTCACGGCCTTCCGGCTGACGGCGTCAGC
GGCGAATACACCACCAAGGCGCTCAATGTTTCCGCGCAGATTCGCCTGGCGCAGTTGCAGACCAACCTCGTGCGCATCCA
GTCCATGTCCGGCGATCTCGGCCAGCGTCACATGATGGTGAATATCCCGGCGGCTGCCATCGAAGCCGTTGAAAATGAAC
GCGTCGTGCTGCGCAATACCGCCGTTGTCGGCCGCGCCAGCCGCCCGACCCACGTCATCAACTCCAAGGTTTACGAGGTC
ATCCTCAATCCTTACTGGACCGCGCCGCGTTCGATCGTCGAAAAGGACATCGTGCCGCTGATGCAGAAGGACCCGACCTA
TCTGGAGCGGAATAACATCCGCCTCATCGACGGCAAGGGACAGGAAGTCTCGCCGACCACGGTCGACTGGTTTGCGCCCA
AGGCTCCGAACCTGATGTTCCGTCAGGACCCCGGCAAGATCAACGCCATGTCCTCGACGAAGATCAACTTCCACAATCCG
AACAACGAATATATGCACGACACGCCGCAGCAGGGCCTGTTCAACAAGCTGATGCGCTTCGAGTCCTCCGGCTGCGTGCG
TGTGCAGAACGTGCGCGACCTGACGTCCTGGCTGCTGCGTGACACGCCCGGCTGGTCGCGCCAGGAAATGGAACGCGTCA
TCGCATCGCGCGTCAACACGCCGATCAAGCTCGCGCAGGAAGTGCCTGTCTATTTCGTCTACATCACCGCATGGTCGGCG
AAGGACGGCGTAGTTCAGTTCCGCGACGATATCTACGGCAAGGACGGCAACGCCGAACTGGCGCTCAACACCACCGCGGG
CATGGAGCAGCCGGCAGGTGCGGTGGACGACGATCTCTTGCCGCGCAACTGA

Upstream 100 bases:

>100_bases
GTATCGGGTATTACCGGCCGGCAGACACGTTGTACGTGTTTGTTAATCATATTGATTTAGGCATTGTTCAGAATGCCGAA
GAGAGTGGCTGGTAGGTAGA

Downstream 100 bases:

>100_bases
TCGGGCTTTTTGCCGTCAGCGTGGAATTGTGGGCGAGGGGACAGGTGATCGCTGGAAAGCCGGCCAGTCCCTCCGCCGTC
ATCCTCGGGCTTGTCCCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTKKSVSDSVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQ
QAIMQYQQIVQNGGWPDVPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVS
GEYTTKALNVSAQIRLAQLQTNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVINSKVYEV
ILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNP
NNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYITAWSA
KDGVVQFRDDIYGKDGNAELALNTTAGMEQPAGAVDDDLLPRN

Sequences:

>Translated_443_residues
MTKKSVSDSVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQ
QAIMQYQQIVQNGGWPDVPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVS
GEYTTKALNVSAQIRLAQLQTNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVINSKVYEV
ILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNP
NNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYITAWSA
KDGVVQFRDDIYGKDGNAELALNTTAGMEQPAGAVDDDLLPRN
>Mature_442_residues
TKKSVSDSVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQQ
AIMQYQQIVQNGGWPDVPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVSG
EYTTKALNVSAQIRLAQLQTNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVINSKVYEVI
LNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPN
NEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYITAWSAK
DGVVQFRDDIYGKDGNAELALNTTAGMEQPAGAVDDDLLPRN

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=303, Percent_Identity=35.3135313531353, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 48931; Mature: 48800

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKSVSDSVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSSRRGNWDDQFDANTSRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPDVPTSQQRLQIGVSDPSVQALRQR
EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHH
LMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVSGEYTTKALNVSAQIRLAQLQ
HHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEHHHHH
TNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVINSKVYEV
HHHHHEECCCCCCCCCEEEEECCHHHHHHHCCCEEEEEECEEEECCCCCCHHHHHHHHHH
ILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDGKGQEVSPTTVDWFAPKAPNLMF
HHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCCCCCEEECCCCCCCCCEE
RQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTSWLLR
ECCCCCEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
DTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYITAWSAKDGVVQFRDDIYGKDGNAEL
CCCCCCHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCCCCEEEHHHHCCCCCCCEE
ALNTTAGMEQPAGAVDDDLLPRN
EEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKKSVSDSVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSSRRGNWDDQFDANTSRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPDVPTSQQRLQIGVSDPSVQALRQR
EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHH
LMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVSGEYTTKALNVSAQIRLAQLQ
HHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEHHHHH
TNLVRIQSMSGDLGQRHMMVNIPAAAIEAVENERVVLRNTAVVGRASRPTHVINSKVYEV
HHHHHEECCCCCCCCCEEEEECCHHHHHHHCCCEEEEEECEEEECCCCCCHHHHHHHHHH
ILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLIDGKGQEVSPTTVDWFAPKAPNLMF
HHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCCCCCEEECCCCCCCCCEE
RQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTSWLLR
ECCCCCEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
DTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYITAWSAKDGVVQFRDDIYGKDGNAEL
CCCCCCHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCCCCEEEHHHHCCCCCCCEE
ALNTTAGMEQPAGAVDDDLLPRN
EEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]