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The map label for this gene is radA [H]

Identifier: 15888420

GI number: 15888420

Start: 1069298

End: 1070704

Strand: Reverse

Name: radA [H]

Synonym: Atu1077

Alternate gene names: 15888420

Gene position: 1070704-1069298 (Counterclockwise)

Preceding gene: 15888421

Following gene: 15888419

Centisome position: 37.68

GC content: 63.68

Gene sequence:

>1407_bases
ATGGCCAAAGCCAAGACCCAATTCGTGTGCCAGAACTGTGGCACGGTGCATAACCGCTGGGCGGGGAAATGCGAAGGCTG
CGGCGAGTGGAATACCATCGTCGAAGAAGACCCGATGGGCGGCATCGGCTCCGGGCCGGGCAAAGTGCCGAAGAAGGGCA
GACCCGTCACGCTGACATCGCTGTCCGGCGAGATCGAGGAAGCGCCGCGCATTCCGACCGGCATCAGCGAGCTGGACCGG
GCGACCGGCGGCGGTTTCGTGCGCGGTTCGGCTGTGTTGATCGGCGGCGATCCGGGCATTGGCAAATCGACCCTCTTGAT
GCAGGCGGCGGCCGCCCTTTCGCGGCGTGGTCACCGCGTCATCTATGTCTCGGGCGAAGAGGCGGTGGCACAGGTGCGCC
TGCGCGCCCAGCGGCTCGGTTCGGCGGATACCGACGTGCTTCTGGCGGCGGAAACCAATGTCGAGGATATTCTGGCGACG
GTTTCCGAGGGCAAGCGGCCCGATCTCATCATCATCGATTCCATCCAGACATTGTGGAGCGACACGGCCGATTCCGCCCC
CGGCACGGTGACGCAGGTGCGCACCGGCGTGCAGGCGATGATCCGTTTCGCCAAGCAGACGGGTGCGACCATGGTGCTTG
TCGGCCATGTCACCAAGGAAGGCCAGATCGCCGGGCCGCGCGTGGTGGAGCACATGGTCGATGCCGTGCTTTATTTCGAG
GGCGACCGCGGCCACCACTATCGAATCCTGCGTACCGTCAAGAACCGCTTCGGGCCGACGGACGAGATCGGCGTGTTCGA
AATGTCGGATGGCGGTCTGCGGGAAGTCTCCAACCCCTCCGAATTGTTCCTCGGCGAGCGCAATGAAAAATCCCCCGGTG
CTGCGGTTTTTGCCGGTATCGAAGGCACGCGGCCCGTGCTGGTCGAAGTGCAGGCGCTGGTCGCGGCGACGTCGCTCGGC
ACCCCGCGCCGCGCCGTGGTCGGTTGGGACAGTTCGCGGCTCGCGATGATCCTTGCCGTGCTGGAGGCCCATTGTGGCGT
AAAGCTCGGCCAGCATGACGTCTATCTGAACGTTGCCGGCGGATACCGCATTTCCGAACCGGCGGCGGATATGGCGATTG
CCTCGGCTCTGGTTTCCTCGCTTGCCGGTCTTGCCCTGCCCGCCGATTGCGTCTATTTCGGCGAAATCAGCCTGTCGGGT
GCCGTCAGGCCAGTGGCGCATACGGTGCAGCGATTGAAAGAAGCTGAAAAACTTGGCTTTTCCGCCGCACTTCTGCCGTC
AGGTTCGGCTGAATTGCCGAAAGCGGGCAAGGGTCGCTGGACGGAAATTGAAAGCCTTCCGGACCTCGTGGCCCACATCG
CCGGCTCCGGCAACCGGTTCAAACAGGTTGAGGACGACGAATATTGA

Upstream 100 bases:

>100_bases
CTTTCGTGTCAACAATGGCGAACTAACCGTAATGCGCGTGCTGCACGGCCATCAAGACATTTCCGCCGACGATTTTAAAC
AAGAAGAAAACTGACGAAAC

Downstream 100 bases:

>100_bases
TCCTTTCGCCAAGGGAAACAGTGGTGTAAGAGGATCGCAAAATTGGCAAGGCAGCGTCTGACAAGGCGTCGCACCTCCGG
AGTTGGTATATGCCCATTAC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILAT
VSEGKRPDLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGIEGTRPVLVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSG
AVRPVAHTVQRLKEAEKLGFSAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY

Sequences:

>Translated_468_residues
MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILAT
VSEGKRPDLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGIEGTRPVLVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSG
AVRPVAHTVQRLKEAEKLGFSAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY
>Mature_467_residues
AKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDRA
TGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILATV
SEGKRPDLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFEG
DRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGIEGTRPVLVEVQALVAATSLGT
PRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGA
VRPVAHTVQRLKEAEKLGFSAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=448, Percent_Identity=45.7589285714286, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 49407; Mature: 49276

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTS
CCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSGEIEEAPRIPTGISELDRATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRV
CCCCHHHCCCCCCCHHHHHHCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILATVSEGKRPDLIIIDSIQTLWS
EEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEECCHHHHHC
DTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGI
CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCCCCCCEEEECC
EGTRPVLVEVQALVAATSLGTPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAG
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEECCCEEEEEECC
GYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGAVRPVAHTVQRLKEAEKLGF
CCEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
SAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTS
CCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSGEIEEAPRIPTGISELDRATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRV
CCCCHHHCCCCCCCHHHHHHCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILATVSEGKRPDLIIIDSIQTLWS
EEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEECCHHHHHC
DTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGI
CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHEECCCCCCCCCCEEEECC
EGTRPVLVEVQALVAATSLGTPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAG
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEECCCEEEEEECC
GYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGAVRPVAHTVQRLKEAEKLGF
CCEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
SAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA