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The map label for this gene is recO

Identifier: 15888381

GI number: 15888381

Start: 1030650

End: 1031414

Strand: Direct

Name: recO

Synonym: Atu1039

Alternate gene names: 15888381

Gene position: 1030650-1031414 (Clockwise)

Preceding gene: 15888380

Following gene: 15888383

Centisome position: 36.27

GC content: 64.44

Gene sequence:

>765_bases
ATGCAGTGGCAGGATGAGGCGATCATTCTCGGCGTTAAACGCCATGGCGAGACGAGTGTCATCGCCGAGGTGATGACCCC
TTCGCGCGGCCGCCATCTGGGCATGGTGCGCTCCGGCCGATCCCGCACCATGCAGCCGGTGCTGCAGGCCGGAAACCGGG
TGGACGTCATCTGGCGCGCCCGCCTGCACGATCATCTCGGTGAATTCCGTATCGAACCGCTGCAATTGCGCGCAGGGCAG
CTGATGGAGACGGCAACAGCCGTATATGGCGTGCAGGCTATGGGCGCTTTGCTCAGGCTTCTGCCGGAGCGTGACCCGCA
TCCGCATCTTTACCAGGCGCTCGATGTCATTCTCGACAATCTCCACGATCCCGTCGATGCCGGCGAACTGTTCGTGCGCT
TCGAACTGGCGGTGCTGAACGATCTCGGTTTCGGCCTCGACCTCAGCGAATGTGCGGCGACGGGGCTGCGCAGCGATCTC
ATCTATGTCTCGCCAAAGACGGGCAGGGCGGTCTGCCGCACGGCGGGCGCCCCCTATGCGGCAAGGATGCTTGCGCTTCC
CGCCTTTCTCGGCGAAGGCCAGTCGAAGGCTGCCGATCCCGAAAGCCTCGCGGCGGCGTTCCGGCTGACCGACCATTTCC
TCCACCGGCATGTTTACGATCCGCGCGGCCTCAATGAAAACGCCGCCCGCGACGGTTTCGTGCAGGCGGCGCTGAAGGCG
CTGGAGCGAAAGGCTGAGCCGCCCGCTCTCGATAAAGCGGTCTAG

Upstream 100 bases:

>100_bases
TTCTTAGACTCGTCGGCATGCCGCGCGACGCCGTAAAAGAATAACGTTTCGCCGCCAGATCGGTTATGATCGGGCTTGAA
TCGAAATTCGGACAGGTTTC

Downstream 100 bases:

>100_bases
AGCATTTCCAGGAAAAGTGGACCCCGGTTTTCCGTCAGGAAATGCGCTCCAGTCTCATGCCATAACCGGCCTTGGTGCCG
GTCGCTCCTGAATGGGCCAG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRARLHDHLGEFRIEPLQLRAGQ
LMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDNLHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDL
IYVSPKTGRAVCRTAGAPYAARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA
LERKAEPPALDKAV

Sequences:

>Translated_254_residues
MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRARLHDHLGEFRIEPLQLRAGQ
LMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDNLHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDL
IYVSPKTGRAVCRTAGAPYAARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA
LERKAEPPALDKAV
>Mature_254_residues
MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRARLHDHLGEFRIEPLQLRAGQ
LMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDNLHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDL
IYVSPKTGRAVCRTAGAPYAARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA
LERKAEPPALDKAV

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_AGRT5 (Q8UGJ8)

Other databases:

- EMBL:   AE007869
- PIR:   AF2704
- PIR:   F97486
- RefSeq:   NP_354062.1
- ProteinModelPortal:   Q8UGJ8
- STRING:   Q8UGJ8
- GeneID:   1133077
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1039
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   ATUM176299-1:ATU1039-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27906; Mature: 27906

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRA
CCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEECHHHCCCHHHHHHHHHCCCEEEEEEHH
RLHDHLGEFRIEPLQLRAGQLMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDLIYVSPKTGRAVCRTAGAPYA
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCHH
ARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LERKAEPPALDKAV
HHHCCCCCCCCCCC
>Mature Secondary Structure
MQWQDEAIILGVKRHGETSVIAEVMTPSRGRHLGMVRSGRSRTMQPVLQAGNRVDVIWRA
CCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEECHHHCCCHHHHHHHHHCCCEEEEEEHH
RLHDHLGEFRIEPLQLRAGQLMETATAVYGVQAMGALLRLLPERDPHPHLYQALDVILDN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LHDPVDAGELFVRFELAVLNDLGFGLDLSECAATGLRSDLIYVSPKTGRAVCRTAGAPYA
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCHH
ARMLALPAFLGEGQSKAADPESLAAAFRLTDHFLHRHVYDPRGLNENAARDGFVQAALKA
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LERKAEPPALDKAV
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194