Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15888093
Identifier: 15888093
GI number: 15888093
Start: 747717
End: 748349
Strand: Reverse
Name: 15888093
Synonym: Atu0750
Alternate gene names: NA
Gene position: 748349-747717 (Counterclockwise)
Preceding gene: 159184450
Following gene: 159184449
Centisome position: 26.34
GC content: 61.93
Gene sequence:
>633_bases ATGAAATCGCTGCATGTGGAAGGCACGGGATGGTTCTACCGCGTCTCGCCGCGCCTCAAACTCCTGACGCTCATGGGCTT CAGCATCGCGCTGTTCCTCACCCGCGACCTCGTTCTGTTGGGATGCGCCGCTATTCTGGCCGCCGTAATCCTGCGCGAAA CGCGGCTGCCGTTCCGGGAAATCGGCGTGCGGTTGCGGCCGGTGATGCTGACCATTTTCCTTGTCGCGGCCTTCAGCTAT CTGCTGCTGCCGGCGCAGGATGCGAGCGTCAATCTCCTGCGGCTGACGGCGCTGGCGCTGCTTGCCACAGCCGTCACCAT CACCGTGAGCATTTCAGCGTTCATGGATGAGATTACACTTGCCACCGCGCCGCTGGAAAGGCTGGGGCTGGTGAAGGCTG CCGATATCGGGCTTGCGGTCGGGCTCGTCGTGCGGTTTGTGCCTGAGATCGTCAACCGTTACCATGCGGTGCGTGATGCG CATCGCGCGCGCGGCCTGCCCGTGCGGATGGCGACCATCATCGTGCCACTGGTGATTATGACGTTGAAGGATGCCGATGC CATTGCCGACGCCATTGACGCGCGTGGTTTCAGAGGCCAAAGCTTTCGGCCAGACAACCATCCGGAGTTTTGA
Upstream 100 bases:
>100_bases TTCAAGGCTTCGACCGTGTGCTTGTTTTCCATGGTGGCGCGCTGGTTGCCGATGCCGGCCCCGAAGAGGCGGTGGCACGC TATCTGGAGGTGGCGGCGCA
Downstream 100 bases:
>100_bases GCGCCATGACGACCCGCGACCTTGTGCTGATTTCGCTGTTTTCCGCCATCATCATCGCACTTGGGCTGCTGCCGCCGATC ACGCTCGGTTTCATTCCGGT
Product: ABC transporter, membrane spanning protein
Products: NA
Alternate protein names: Biotin Transporter Permease Protein BioN; Transmembrane Component Of ABC Transporter; Cobalt ABC Transporter Permease Protein; Cobalt/Biotin ABC Transporter Permease Protein; Biotin Transporter; Biotin Transporter Permease Protein
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MKSLHVEGTGWFYRVSPRLKLLTLMGFSIALFLTRDLVLLGCAAILAAVILRETRLPFREIGVRLRPVMLTIFLVAAFSY LLLPAQDASVNLLRLTALALLATAVTITVSISAFMDEITLATAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDA HRARGLPVRMATIIVPLVIMTLKDADAIADAIDARGFRGQSFRPDNHPEF
Sequences:
>Translated_210_residues MKSLHVEGTGWFYRVSPRLKLLTLMGFSIALFLTRDLVLLGCAAILAAVILRETRLPFREIGVRLRPVMLTIFLVAAFSY LLLPAQDASVNLLRLTALALLATAVTITVSISAFMDEITLATAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDA HRARGLPVRMATIIVPLVIMTLKDADAIADAIDARGFRGQSFRPDNHPEF >Mature_210_residues MKSLHVEGTGWFYRVSPRLKLLTLMGFSIALFLTRDLVLLGCAAILAAVILRETRLPFREIGVRLRPVMLTIFLVAAFSY LLLPAQDASVNLLRLTALALLATAVTITVSISAFMDEITLATAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDA HRARGLPVRMATIIVPLVIMTLKDADAIADAIDARGFRGQSFRPDNHPEF
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23013; Mature: 23013
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLHVEGTGWFYRVSPRLKLLTLMGFSIALFLTRDLVLLGCAAILAAVILRETRLPFRE CCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IGVRLRPVMLTIFLVAAFSYLLLPAQDASVNLLRLTALALLATAVTITVSISAFMDEITL HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDAHRARGLPVRMATIIVPLVIM HHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH TLKDADAIADAIDARGFRGQSFRPDNHPEF HHCCHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKSLHVEGTGWFYRVSPRLKLLTLMGFSIALFLTRDLVLLGCAAILAAVILRETRLPFRE CCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IGVRLRPVMLTIFLVAAFSYLLLPAQDASVNLLRLTALALLATAVTITVSISAFMDEITL HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDAHRARGLPVRMATIIVPLVIM HHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH TLKDADAIADAIDARGFRGQSFRPDNHPEF HHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA