Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888005
Identifier: 15888005
GI number: 15888005
Start: 657753
End: 659027
Strand: Direct
Name: 15888005
Synonym: Atu0663
Alternate gene names: NA
Gene position: 657753-659027 (Clockwise)
Preceding gene: 159185428
Following gene: 159184412
Centisome position: 23.15
GC content: 65.49
Gene sequence:
>1275_bases ATGGCCAAGGGTAGATTTGCATTCGCGAGCGCGCCGGAGAGATCGCTGGCTCTGGGCGAGGTTCATGCGCGGCCGACCGT GCTGCTTGCCCCGTCGCGCATCATCGTCCAGCTTGCCTTCATGATGGATGGCGGCTCGGCCGTGCACCATTCGGTCATTG CGGAAATGTCGCGCAGCCGCGGTGTCGCGCCGCCGGAACGTGATGCCCGCCACCACGCCATGCCCTGGGGGCAGGGGACG CTGCGCTGGGAGCGGCACACGGAATTCTCGACCTGGTTCTGGGACGGCCCCGCGCCGGAAAAGTTTGGCGGCGAGATTGC CGGCGACCCTTTCGGCGACAGCTTTTCGCCGCCGGGCTCGCTGATCTCGGGGGTACGGCTGGAAATCCGCCCGGAAAACG GTGTCACCTCCCAGGCGCAGGCGATGTTCGAGCCGACCAGCCTCTGTCATAGCGATGTGCGCGATGGGCAGGCGGCGATC CTCACCGATTTCCGTCAGGATCGCGATGGGCTGACGCAGATATTGGTGATCGACCGGGGCTTGAGTGATTACAGCCGCGG CGCGCTGGTGCAGCGGCTGCTCGATATCGAGACCTATCGCACGCTCGCCATGCTCGGCCTGCCGATGGCGCAGACGCTGT CGCCGGAAATTCGCCGCATCGAAGATGGCCTCACCGGCATCACCCAGCGAATGAAGAGCGACGCGCGCGACGAGGCGGAT GCGCTGCTGGCCGAAATGACCCGGCTCGCCGCCGAGCTGGAGGCCAATGCCGCGCTCAGCCTTTATCGTTTCGGCGCGAG CCGCGCTTATGACGGCATCGTGCGCGAACGCATCCGGGCGCTCGCGGAAACGCCCGTTCAGGGCCATGAGACCATGGGCA GCTTTCTGGAACGGCGCATGGCGCCGGCCATGCGCACCTGCCAGTCGGTGGAGGAGCGGCAGGCCAACCTGTCGCGCAAG CTCTATCGCGCCACTGCGCTCGTCAGAAGCTGGATCGACGTGGAACTGGAGCGGCAGAATACCGTGCTGCTCAACACCAT GAACAAGCGCGCCGCCATGCAGCTTCGCCTGCAACAGACGGTGGAAGGCCTGTCAGTCGCGGCGATCTCCTATTATGTCG TCGGGCTCATCGGTTATCTCACCAAGGCGATCAGCCATGACGTGCTGCCGGTCGATCCGGCCGTCGTCACCGGCATTTCC GTTCCCTTCGCGGTGCTTGGTGTCTGGTGGGTCGTGCGCCGCATCCGCCGCTCCCATGCGGAAGGTGGACATTGA
Upstream 100 bases:
>100_bases TGCCAGGTGGATCAAAACAATTACATCGGCTTCGATTGCGATGTTTTCATTGCAATCGATGTTTTAGAAATCCGGCGACA ATAGCGGGGACGGTATCGCA
Downstream 100 bases:
>100_bases ACGACGCCCTACCTCCCTCATTCCTGTGCTTGTCACAGGAAACCAGTCGACGCGCGTCTGCGCAGAGGGAAGACTCTTTT CAGCCCAAGGACTTGGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MAKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDGGSAVHHSVIAEMSRSRGVAPPERDARHHAMPWGQGT LRWERHTEFSTWFWDGPAPEKFGGEIAGDPFGDSFSPPGSLISGVRLEIRPENGVTSQAQAMFEPTSLCHSDVRDGQAAI LTDFRQDRDGLTQILVIDRGLSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIRRIEDGLTGITQRMKSDARDEAD ALLAEMTRLAAELEANAALSLYRFGASRAYDGIVRERIRALAETPVQGHETMGSFLERRMAPAMRTCQSVEERQANLSRK LYRATALVRSWIDVELERQNTVLLNTMNKRAAMQLRLQQTVEGLSVAAISYYVVGLIGYLTKAISHDVLPVDPAVVTGIS VPFAVLGVWWVVRRIRRSHAEGGH
Sequences:
>Translated_424_residues MAKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDGGSAVHHSVIAEMSRSRGVAPPERDARHHAMPWGQGT LRWERHTEFSTWFWDGPAPEKFGGEIAGDPFGDSFSPPGSLISGVRLEIRPENGVTSQAQAMFEPTSLCHSDVRDGQAAI LTDFRQDRDGLTQILVIDRGLSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIRRIEDGLTGITQRMKSDARDEAD ALLAEMTRLAAELEANAALSLYRFGASRAYDGIVRERIRALAETPVQGHETMGSFLERRMAPAMRTCQSVEERQANLSRK LYRATALVRSWIDVELERQNTVLLNTMNKRAAMQLRLQQTVEGLSVAAISYYVVGLIGYLTKAISHDVLPVDPAVVTGIS VPFAVLGVWWVVRRIRRSHAEGGH >Mature_423_residues AKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDGGSAVHHSVIAEMSRSRGVAPPERDARHHAMPWGQGTL RWERHTEFSTWFWDGPAPEKFGGEIAGDPFGDSFSPPGSLISGVRLEIRPENGVTSQAQAMFEPTSLCHSDVRDGQAAIL TDFRQDRDGLTQILVIDRGLSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIRRIEDGLTGITQRMKSDARDEADA LLAEMTRLAAELEANAALSLYRFGASRAYDGIVRERIRALAETPVQGHETMGSFLERRMAPAMRTCQSVEERQANLSRKL YRATALVRSWIDVELERQNTVLLNTMNKRAAMQLRLQQTVEGLSVAAISYYVVGLIGYLTKAISHDVLPVDPAVVTGISV PFAVLGVWWVVRRIRRSHAEGGH
Specific function: Unknown
COG id: COG4949
COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46881; Mature: 46750
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDGGSAVHHSVIAEMSRSR CCCCCEEECCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC GVAPPERDARHHAMPWGQGTLRWERHTEFSTWFWDGPAPEKFGGEIAGDPFGDSFSPPGS CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCHH LISGVRLEIRPENGVTSQAQAMFEPTSLCHSDVRDGQAAILTDFRQDRDGLTQILVIDRG HHCCCEEEEECCCCCCHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECC LSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIRRIEDGLTGITQRMKSDARDEAD CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHH ALLAEMTRLAAELEANAALSLYRFGASRAYDGIVRERIRALAETPVQGHETMGSFLERRM HHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH APAMRTCQSVEERQANLSRKLYRATALVRSWIDVELERQNTVLLNTMNKRAAMQLRLQQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEECHHHHHHHHHHHHHH VEGLSVAAISYYVVGLIGYLTKAISHDVLPVDPAVVTGISVPFAVLGVWWVVRRIRRSHA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCC EGGH CCCC >Mature Secondary Structure AKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDGGSAVHHSVIAEMSRSR CCCCEEECCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC GVAPPERDARHHAMPWGQGTLRWERHTEFSTWFWDGPAPEKFGGEIAGDPFGDSFSPPGS CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCHH LISGVRLEIRPENGVTSQAQAMFEPTSLCHSDVRDGQAAILTDFRQDRDGLTQILVIDRG HHCCCEEEEECCCCCCHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECC LSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIRRIEDGLTGITQRMKSDARDEAD CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHH ALLAEMTRLAAELEANAALSLYRFGASRAYDGIVRERIRALAETPVQGHETMGSFLERRM HHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH APAMRTCQSVEERQANLSRKLYRATALVRSWIDVELERQNTVLLNTMNKRAAMQLRLQQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEECHHHHHHHHHHHHHH VEGLSVAAISYYVVGLIGYLTKAISHDVLPVDPAVVTGISVPFAVLGVWWVVRRIRRSHA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCC EGGH CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA