Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887941
Identifier: 15887941
GI number: 15887941
Start: 581170
End: 581589
Strand: Direct
Name: 15887941
Synonym: Atu8133
Alternate gene names: NA
Gene position: 581170-581589 (Clockwise)
Preceding gene: 15887940
Following gene: 159184384
Centisome position: 20.45
GC content: 57.14
Gene sequence:
>420_bases ATGGGCGTGCAGAGCGGGGCGGGTGTGATCAGGAACCATTACCTGAGCAAGGAAGAATCCTTCATGTATGACCGCGAAAG CCGGTTTCGCATGGAAGATACCATGAATGCGGCGCGCATCGAATATACTGAAAAGGCCGTCATGCACATGGCGGCGCGCC GTTGCGACGTCATCCGCATTTCCCAGACCGAAGCGGTGCTGGCGCTGCTGACGAAATATAACCTGCCCAACCAGTTCTAT CTCGATATTCCCGACGCCCGCATCAGCAAGATTGGCTGCGTGATATTGCGCGTCAACGCCAACAACACCATCCACGTCCG CTTCCTGCGCATGCTGACGCAGAAGGAACTGGACCGCATCTTCGTGTTCAGCACGCACCCGGCCCACAAGGACCGGAAGC TGGATATCCGGTCGTTCTGA
Upstream 100 bases:
>100_bases ACCATCGGAAATGTCCCGCTTCCGGCCTGTTTAAGAGCGCCCTGATATGAATTGTTAAAGACTATGGCCTAGTCTCGACC CATCGATTGAGCATGGGAGT
Downstream 100 bases:
>100_bases GACCTATCCAAGCTGTCGAAGGGTCTTAAGAAAGCCCGCCCAGAACCGTCTGCTTCAGCTTCACATCCGCCACCTCGGTA AAGGTCAGGTCGCCACGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MGVQSGAGVIRNHYLSKEESFMYDRESRFRMEDTMNAARIEYTEKAVMHMAARRCDVIRISQTEAVLALLTKYNLPNQFY LDIPDARISKIGCVILRVNANNTIHVRFLRMLTQKELDRIFVFSTHPAHKDRKLDIRSF
Sequences:
>Translated_139_residues MGVQSGAGVIRNHYLSKEESFMYDRESRFRMEDTMNAARIEYTEKAVMHMAARRCDVIRISQTEAVLALLTKYNLPNQFY LDIPDARISKIGCVILRVNANNTIHVRFLRMLTQKELDRIFVFSTHPAHKDRKLDIRSF >Mature_138_residues GVQSGAGVIRNHYLSKEESFMYDRESRFRMEDTMNAARIEYTEKAVMHMAARRCDVIRISQTEAVLALLTKYNLPNQFYL DIPDARISKIGCVILRVNANNTIHVRFLRMLTQKELDRIFVFSTHPAHKDRKLDIRSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16267; Mature: 16136
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVQSGAGVIRNHYLSKEESFMYDRESRFRMEDTMNAARIEYTEKAVMHMAARRCDVIRI CCCCCCCHHHHHHHCCCCHHHEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE SQTEAVLALLTKYNLPNQFYLDIPDARISKIGCVILRVNANNTIHVRFLRMLTQKELDRI CHHHHHHHHHHHCCCCCEEEEECCCCHHCCEEEEEEEECCCCEEEHHHHHHHHHHHHCEE FVFSTHPAHKDRKLDIRSF EEEECCCCCCCCCCCCCCC >Mature Secondary Structure GVQSGAGVIRNHYLSKEESFMYDRESRFRMEDTMNAARIEYTEKAVMHMAARRCDVIRI CCCCCCHHHHHHHCCCCHHHEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE SQTEAVLALLTKYNLPNQFYLDIPDARISKIGCVILRVNANNTIHVRFLRMLTQKELDRI CHHHHHHHHHHHCCCCCEEEEECCCCHHCCEEEEEEEECCCCEEEHHHHHHHHHHHHCEE FVFSTHPAHKDRKLDIRSF EEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA