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The map label for this gene is flgC

Identifier: 15887900

GI number: 15887900

Start: 541059

End: 541478

Strand: Reverse

Name: flgC

Synonym: Atu0554

Alternate gene names: 15887900

Gene position: 541478-541059 (Counterclockwise)

Preceding gene: 159184364

Following gene: 15887899

Centisome position: 19.06

GC content: 60.95

Gene sequence:

>420_bases
ATGGATCCCTTGAGTGCGGCAAGCAAGATAGCCGGCAGCGGCCTGGAGGTGCAGTCCACACGACTGCGCATCGTCTCCGA
AAACATCGCCAACGCCCGATCGACCGGCGATACGCCCGGTGCCGATCCCTATCGTCGCAAGACCGTCACCTTCGGCTCCG
AGCTGGACCACGTCAGCGGCGTCGAGCGCGTGAAGGTAAAGAAGCTCGGTGTCGACCGTGGCGATTTCGTCCACGAATAC
GACCCCGGCAATCCGGCGGCCGATACCAACGGCATGGTCAAGATGCCGAACGTCAACGTCCTGATCGAAATGGCCGACAT
GCGCGAAGCAAACCGCAGCTATGACGCCAATCTTCAGGTCATCCGCCAGACACGCGACCTCGTCGCCTCCACAATCGACC
TTCTGAAGGCATCGCAATGA

Upstream 100 bases:

>100_bases
AATGACCAAGACCGGCGAGATCAAGCGGCAGTACGACCTGAACGCCAGTCTCGTCAAATCCTTCCATCGCATGATGCTGA
TGACGGTTAAGAGGTAAACC

Downstream 100 bases:

>100_bases
TCGACGGTATCAAGCAACTCGGTTCTCTTTCGCTCACCCGCGGCGCAAGCGGCGTCTCCTCGCTGACGGAAAGCCTTTTC
GGCGGCGAGCAGCAGTCAAC

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEY
DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLKASQ

Sequences:

>Translated_139_residues
MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEY
DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLKASQ
>Mature_139_residues
MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEY
DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLKASQ

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family

Homologues:

Organism=Escherichia coli, GI1787314, Length=126, Percent_Identity=41.2698412698413, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGC_AGRT5 (Q44336)

Other databases:

- EMBL:   U39941
- EMBL:   U95165
- EMBL:   AE007869
- PIR:   AE2644
- PIR:   E97426
- RefSeq:   NP_353581.1
- STRING:   Q44336
- GeneID:   1132592
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0554
- eggNOG:   COG1558
- HOGENOM:   HBG700631
- OMA:   DKVVRDD
- PhylomeDB:   Q44336
- ProtClustDB:   PRK05681
- BioCyc:   ATUM176299-1:ATU0554-MONOMER
- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299
- TIGRFAMs:   TIGR01395

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod

EC number: NA

Molecular weight: Translated: 15100; Mature: 15100

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSG
CCCHHHHHHHCCCCCEECHHHEEEHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHCC
VERVKVKKLGVDRGDFVHEYDPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQV
HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEHHHHHCCCCCCCHHHH
IRQTRDLVASTIDLLKASQ
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSG
CCCHHHHHHHCCCCCEECHHHEEEHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHCC
VERVKVKKLGVDRGDFVHEYDPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQV
HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEHHHHHCCCCCCCHHHH
IRQTRDLVASTIDLLKASQ
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9161424; 11743193; 11743194