Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887801
Identifier: 15887801
GI number: 15887801
Start: 445537
End: 446106
Strand: Direct
Name: 15887801
Synonym: Atu8125
Alternate gene names: NA
Gene position: 445537-446106 (Clockwise)
Preceding gene: 159184310
Following gene: 159185416
Centisome position: 15.68
GC content: 61.23
Gene sequence:
>570_bases ATGGCTGTTCTGTCCATGAAATGGGCCGACCGCAATCTTGCGGAGTACGGCGACCGTATAGCGGAACTCAAACGGCGCTT CCCGACAGTTCTGCCGCGCATCGTCAATCAGGTCGGCAACAGGACGAAAACCGTTGTCATCCGCGAATTGACGAAACAGA CGGGATTGCCGCGCGCCACCATCGTAAAGGCCATCGGCAATCCGGCAACCGCAAAGCCGGGCCGGTTCGTCTATGACATG ACCACGCGGGGCGGCAACATTCGCCTTAAATATCTGCGCCCGAAGGAAACCGAAGCCGGCGTCGTGGCGCGACCATTCGG CAAGCCGATGCTCTATCCCGGCGCGTTCCTGCGTGGTGGACAGTTCCCCGACCGTAAGCTGGTGGCGCAGTTTAACGGCC ATGCCTATTACCGGCTCAACCGCTCCGGCACGAAGATCACCTTCGCCCGCTCGGGGGTCTTCATCCCGAAGGAAATGACC AGCGGTGCGACAGCCGCAGCATTCCAGCGCATTGCAGCGCCCTTGCTGAAAGAGCGGGTCGAAGCCGCCCTTGCCAAGCT GGTCCCCTGA
Upstream 100 bases:
>100_bases GCGACAGCTATATCATCGGCGGACTTGAGCAAAGGCGACCCTAACCCGGTCGCCTTTTTCGTTTGCATAGGGTGTAGGCA ACTTCCGGGAAAATCTGACG
Downstream 100 bases:
>100_bases CTGGCCACCCCGACCCTCGCCCTTGACCCGCCCCATACCCCCCTCGGTCGGGTCCTCCCCCAAAAGAGGCCAAGTAGCGG GTGTGGGCGACTGCGGGATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MAVLSMKWADRNLAEYGDRIAELKRRFPTVLPRIVNQVGNRTKTVVIRELTKQTGLPRATIVKAIGNPATAKPGRFVYDM TTRGGNIRLKYLRPKETEAGVVARPFGKPMLYPGAFLRGGQFPDRKLVAQFNGHAYYRLNRSGTKITFARSGVFIPKEMT SGATAAAFQRIAAPLLKERVEAALAKLVP
Sequences:
>Translated_189_residues MAVLSMKWADRNLAEYGDRIAELKRRFPTVLPRIVNQVGNRTKTVVIRELTKQTGLPRATIVKAIGNPATAKPGRFVYDM TTRGGNIRLKYLRPKETEAGVVARPFGKPMLYPGAFLRGGQFPDRKLVAQFNGHAYYRLNRSGTKITFARSGVFIPKEMT SGATAAAFQRIAAPLLKERVEAALAKLVP >Mature_188_residues AVLSMKWADRNLAEYGDRIAELKRRFPTVLPRIVNQVGNRTKTVVIRELTKQTGLPRATIVKAIGNPATAKPGRFVYDMT TRGGNIRLKYLRPKETEAGVVARPFGKPMLYPGAFLRGGQFPDRKLVAQFNGHAYYRLNRSGTKITFARSGVFIPKEMTS GATAAAFQRIAAPLLKERVEAALAKLVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20943; Mature: 20812
Theoretical pI: Translated: 11.70; Mature: 11.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLSMKWADRNLAEYGDRIAELKRRFPTVLPRIVNQVGNRTKTVVIRELTKQTGLPRAT CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH IVKAIGNPATAKPGRFVYDMTTRGGNIRLKYLRPKETEAGVVARPFGKPMLYPGAFLRGG HHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHCCC QFPDRKLVAQFNGHAYYRLNRSGTKITFARSGVFIPKEMTSGATAAAFQRIAAPLLKERV CCCCHHHHEEECCEEEEEECCCCCEEEEECCCEECCHHHCCCHHHHHHHHHHHHHHHHHH EAALAKLVP HHHHHHHCC >Mature Secondary Structure AVLSMKWADRNLAEYGDRIAELKRRFPTVLPRIVNQVGNRTKTVVIRELTKQTGLPRAT CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH IVKAIGNPATAKPGRFVYDMTTRGGNIRLKYLRPKETEAGVVARPFGKPMLYPGAFLRGG HHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHCCC QFPDRKLVAQFNGHAYYRLNRSGTKITFARSGVFIPKEMTSGATAAAFQRIAAPLLKERV CCCCHHHHEEECCEEEEEECCCCCEEEEECCCEECCHHHCCCHHHHHHHHHHHHHHHHHH EAALAKLVP HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA