Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887732
Identifier: 15887732
GI number: 15887732
Start: 375023
End: 375400
Strand: Direct
Name: 15887732
Synonym: Atu0382
Alternate gene names: NA
Gene position: 375023-375400 (Clockwise)
Preceding gene: 15887730
Following gene: 159184286
Centisome position: 13.2
GC content: 61.9
Gene sequence:
>378_bases ATGACGGCACCGGATCGAGACAAGCAGAGCGGTTTGCGGGACGAAGTGCTCGCCGGCGAATATGTGCTGGGTGCCCTGCC GCCGGAAAGCATGGCGGAGCTTACAAAGCGCGTGAAGCGCGATCGCCAATTTGCCGCCATGGTCAGGCGCTGGCGGGAAA ATCTCGCCGAAACGGAATATCGGGAAAAAGCGACGATGGCCGTTTTGCTTGAAAGGGACCCGGCCAGACCCGGCCTGCCT TTCAGAAGTCAGCCGCTGCGCGGCGGCAGCGTGTTCGCCGCCATGTTTTCGGAAGTCTGGAATTCCGTGCGCTTCTGGCG GCTTCTGGCGCTGACGGCGATGCTCTGGACCGCCGTTCTGCTTTTCACCATCGCCTGA
Upstream 100 bases:
>100_bases GCTTTGTTGGAAGCAGGGGAGGGGTTATTCAGCAGGGCGACGGACATGTCGCGCGTCGTGAAACGATGCTGGCCTGAACG ACCGAGGAGTTTGAAGACCC
Downstream 100 bases:
>100_bases CGCGAAAACGCTTTAGAGCAAAACCGTTCTGACGATCTCAGCCCGCAGATCGTCCAGCCCGAAGGATTTTTCCGACGAGG TGGCAAGAACTTCGGGATAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MTAPDRDKQSGLRDEVLAGEYVLGALPPESMAELTKRVKRDRQFAAMVRRWRENLAETEYREKATMAVLLERDPARPGLP FRSQPLRGGSVFAAMFSEVWNSVRFWRLLALTAMLWTAVLLFTIA
Sequences:
>Translated_125_residues MTAPDRDKQSGLRDEVLAGEYVLGALPPESMAELTKRVKRDRQFAAMVRRWRENLAETEYREKATMAVLLERDPARPGLP FRSQPLRGGSVFAAMFSEVWNSVRFWRLLALTAMLWTAVLLFTIA >Mature_124_residues TAPDRDKQSGLRDEVLAGEYVLGALPPESMAELTKRVKRDRQFAAMVRRWRENLAETEYREKATMAVLLERDPARPGLPF RSQPLRGGSVFAAMFSEVWNSVRFWRLLALTAMLWTAVLLFTIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14300; Mature: 14169
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPDRDKQSGLRDEVLAGEYVLGALPPESMAELTKRVKRDRQFAAMVRRWRENLAETEY CCCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REKATMAVLLERDPARPGLPFRSQPLRGGSVFAAMFSEVWNSVRFWRLLALTAMLWTAVL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTIA HHHCC >Mature Secondary Structure TAPDRDKQSGLRDEVLAGEYVLGALPPESMAELTKRVKRDRQFAAMVRRWRENLAETEY CCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REKATMAVLLERDPARPGLPFRSQPLRGGSVFAAMFSEVWNSVRFWRLLALTAMLWTAVL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTIA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA