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The map label for this gene is 15887628

Identifier: 15887628

GI number: 15887628

Start: 273790

End: 274368

Strand: Direct

Name: 15887628

Synonym: Atu0279

Alternate gene names: NA

Gene position: 273790-274368 (Clockwise)

Preceding gene: 159184242

Following gene: 15887629

Centisome position: 9.64

GC content: 55.44

Gene sequence:

>579_bases
ATGAAAAACCCTCAAAGCAAAGCCGATGATATTCTCCAGTGCGCACGCACCCTGATCATAAGAGGTGGCTATAACAGTTT
CAGCTACGCGGATATCTCCCAGGTAGTTGGTATTCGCAATGCGAGCATTCACCACCATTTTCCCAGCAAATCTGACCTGG
TCTGCAAACTGGTCTCACAATACAGGCAGGAAGCTGAAGCAGGGATCGCCGAGTTGGAAAAAAACATTTCTGATCCGCTG
GAACAGCTTCGCGCCTATATCGGCTATTGGGAAGGCTGTATCGCTGACGCGACCCATCCTTTCTGCGTCTGTGCGCTGCT
TGCCAGCGAGATACCGGTTCTTCCCGAAACGGTCGTTCTTGAAGTGCGTGCGCATTTTAGAAGTCTCTCGGACTGGCTCA
CCGCCGTGCTGGAGCGCGGCATTGCCCAGGGACGCCTTGTACTGACGGGAACAGCACGGGCCAATGCTGAAATCTTCATG
GCTACGGTGCACGGCGCAATGCTTTCAGCGCGTGCGCACGGCGATGCCGCGACCTTTGGCGCGATAACCCGCCCCATGCT
GGAGCGCATCACCGCTTGA

Upstream 100 bases:

>100_bases
AGAGAACGAATTGCGGTGTCCGCGCCGCATGCCGGAAAGATCGATAGCCTTATGACACGGCACCATTGACAATCTACCTA
CTAATTGGTAGGTATCGCGC

Downstream 100 bases:

>100_bases
AATTACACCTTGTAAGGGGCGTGGATGCATGACCCGAGCGAGCTGCCGACCAATCAACAGACAACGCTACGCTTGCAGAT
ATGTCGGTGACAATCTGCTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator Protein; TetR/AcrR Family Transcriptional Regulator; AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; HTH-Type Protein SlmA; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPL
EQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFM
ATVHGAMLSARAHGDAATFGAITRPMLERITA

Sequences:

>Translated_192_residues
MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPL
EQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFM
ATVHGAMLSARAHGDAATFGAITRPMLERITA
>Mature_192_residues
MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPL
EQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFM
ATVHGAMLSARAHGDAATFGAITRPMLERITA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20978; Mature: 20978

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
EVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AITRPMLERITA
HHHHHHHHHHCC
>Mature Secondary Structure
MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
EVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AITRPMLERITA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA