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The map label for this gene is ybaK [H]

Identifier: 15887625

GI number: 15887625

Start: 271492

End: 271968

Strand: Reverse

Name: ybaK [H]

Synonym: Atu0275

Alternate gene names: 15887625

Gene position: 271968-271492 (Counterclockwise)

Preceding gene: 15887626

Following gene: 15887624

Centisome position: 9.57

GC content: 61.01

Gene sequence:

>477_bases
ATGTCCAAAACGACCCGCGCCACCCAGATGCTGACGAAGGCCGGCATTGCCTTCGCCACCGTCACCTATGATTACGACCC
GAATGCCGACCGCATCGGCCTGCAGGCGGCCGAGGCGATCGGTGAGGCTCCGCATCTTGTGCTGAAGACGCTGATGGCGG
AGCTGGACGGCAAGCCGGTTTGCGTTGTCGTCCCCTCCGACCGCGAGGTGAGCATGAAGAAGCTTGCCGCCGCCTTCGGT
GGCAAATCCGCCAACATGATGAAACCCGCCGATGCGGAGCGGGCGACGGGTTACCATGTCGGCGGCATCAGCCCTTTCGG
TCAGAAGAAACAGGTGCCGACAGCCATTGAAGCCGATGCCATGGTGCATGATTACGTCTACATGAATGGCGGGCAACGTG
GTTTGCAGGTAAGGCTTTCGCCCCGTGATGCCCAGAAAGTGCTTGATGCCATTGTCGCACCGCTGGTCGCGGAATGA

Upstream 100 bases:

>100_bases
CTCGATGATCAAGCGCCCGGTGCTGGAGGCGAAGGGCAAGATAACCGTCGGCTTCAAGCCGGAAATCTACCAGACCGTTT
TTGCCTGAACGCAGCCCACC

Downstream 100 bases:

>100_bases
GGCGAAACGGCGGCCCTTGAAAGCATTTGGCTTTCGGAAGGAATGGGCTATGGTCGGCGCCTCCTATTGAAATAGACGAA
GGCAGATCATGACCGTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSKTTRATQMLTKAGIAFATVTYDYDPNADRIGLQAAEAIGEAPHLVLKTLMAELDGKPVCVVVPSDREVSMKKLAAAFG
GKSANMMKPADAERATGYHVGGISPFGQKKQVPTAIEADAMVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAPLVAE

Sequences:

>Translated_158_residues
MSKTTRATQMLTKAGIAFATVTYDYDPNADRIGLQAAEAIGEAPHLVLKTLMAELDGKPVCVVVPSDREVSMKKLAAAFG
GKSANMMKPADAERATGYHVGGISPFGQKKQVPTAIEADAMVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAPLVAE
>Mature_157_residues
SKTTRATQMLTKAGIAFATVTYDYDPNADRIGLQAAEAIGEAPHLVLKTLMAELDGKPVCVVVPSDREVSMKKLAAAFGG
KSANMMKPADAERATGYHVGGISPFGQKKQVPTAIEADAMVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAPLVAE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=40.9090909090909, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16802; Mature: 16670

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTRATQMLTKAGIAFATVTYDYDPNADRIGLQAAEAIGEAPHLVLKTLMAELDGKPV
CCCHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CVVVPSDREVSMKKLAAAFGGKSANMMKPADAERATGYHVGGISPFGQKKQVPTAIEADA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHH
MVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAPLVAE
EEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTTRATQMLTKAGIAFATVTYDYDPNADRIGLQAAEAIGEAPHLVLKTLMAELDGKPV
CCHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CVVVPSDREVSMKKLAAAFGGKSANMMKPADAERATGYHVGGISPFGQKKQVPTAIEADA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHH
MVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAPLVAE
EEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]