Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is rpmI [H]
Identifier: 15887605
GI number: 15887605
Start: 252753
End: 252956
Strand: Direct
Name: rpmI [H]
Synonym: Atu0255
Alternate gene names: 15887605
Gene position: 252753-252956 (Clockwise)
Preceding gene: 15887604
Following gene: 15887606
Centisome position: 8.89
GC content: 56.37
Gene sequence:
>204_bases ATGCCCAAGATGAAGACGAAGTCCGCTGCAAAAAAGCGGTTCAAGATCACCGCCACCGGTAAGGTTGTTGCAGCCGCCGC CGGTAAGCGCCACGGCATGATCAAGCGTACCAACAAGTTCATTCGCGACGCGCGTGGAACCATGGTTCTCGCCGAAGCTG ACGGCAAGAAAGTCGTCAAGAACTACCTGCCGAACGGTCTCTGA
Upstream 100 bases:
>100_bases CGCGCGTCCGAACGGTCCGGCAGGGCATGCCGAGGCCGTTCCTGAATAGCTTGAAATAGGCCTCGTCTGCCTGTTTCGAT ACAAAAAACGGAGTAGCAAA
Downstream 100 bases:
>100_bases GACTTTTCCGCACTTTTGGACACTTTAAGGAGATCATGACATGGCACGCGTAAAACGTGGCGTAACTTCCCGCGCCAAGC ACACCAAGACACTCAAGGCA
Product: 50S ribosomal protein L35
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 67; Mature: 66
Protein sequence:
>67_residues MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVKNYLPNGL
Sequences:
>Translated_67_residues MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVKNYLPNGL >Mature_66_residues PKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVKNYLPNGL
Specific function: Unknown
COG id: COG0291
COG function: function code J; Ribosomal protein L35
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L35P family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021137 - InterPro: IPR018265 - InterPro: IPR001706 [H]
Pfam domain/function: PF01632 Ribosomal_L35p [H]
EC number: NA
Molecular weight: Translated: 7301; Mature: 7170
Theoretical pI: Translated: 11.89; Mature: 11.89
Prosite motif: PS00936 RIBOSOMAL_L35
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVK CCCCCCCCHHHHEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHH NYLPNGL HHCCCCC >Mature Secondary Structure PKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVK CCCCCCCHHHHEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHH NYLPNGL HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA