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The map label for this gene is rirA [H]

Identifier: 15887554

GI number: 15887554

Start: 205480

End: 205950

Strand: Reverse

Name: rirA [H]

Synonym: Atu0201

Alternate gene names: 15887554

Gene position: 205950-205480 (Counterclockwise)

Preceding gene: 159184208

Following gene: 159184206

Centisome position: 7.25

GC content: 57.32

Gene sequence:

>471_bases
ATGCGTTTGACCAAACAGACCAACTATGCCGTTCGCATGTTGATGTATTGCGCTGCGAATGAAGGCAAGTTGAGCCGCAT
TCCGGAGATCGCCAGGGCTTACGGCGTATCTGAGCTGTTCCTTTTCAAGATCCTGCAGCCGCTCAACAAGGCGGGCCTCG
TGGAAACCGTGCGTGGCCGCAATGGCGGCGTGCGCCTTGGCAAACCTGCCGAAAAAATCAGCCTGTTTGACGTCGTTCGT
GTAACCGAAGACAGCTTCGCCATGGCTGAGTGCTTTGAGGACGGCGCCGTGGAATGTCCGCTCGTGGACAGCTGCGGCCT
GAACTCGGCGCTGCGCAAGGCGCTGAATGCCTTCTTTGATGTACTGGCGGAATATTCGATCGATGATCTCGTCAAGGCGC
GCCCGCAGATCAACTTCCTGCTCGGGATCGATACGGAAATGCCGAAGATTGCCGCACTTCCGGCAGCCTGA

Upstream 100 bases:

>100_bases
TCGAGAAATATCGGATGGATGCCAGTTTTTTCAGTTTCTGGAATTGTTCTAAACTGAAAAAGAGACTATATAACTCCACA
TTGAGAGTTAGGAGACCAGC

Downstream 100 bases:

>100_bases
TCGTTCCATAATTTATCCGGCAATTGCCAAGCCCGTGGCCACAAGTCACGGGCTTTTCTTTTATCGAATGTGCAGGAAAT
ATAATATTTTTAGTCCCGCG

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAEKISLFDVVR
VTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFDVLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA

Sequences:

>Translated_156_residues
MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAEKISLFDVVR
VTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFDVLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA
>Mature_156_residues
MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGRNGGVRLGKPAEKISLFDVVR
VTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFDVLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=143, Percent_Identity=40.5594405594406, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17117; Mature: 17117

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01039 SBP_BACTERIAL_3 ; PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHCCC
NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD
CCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA
HHHHCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHCCC
NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD
CCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA
HHHHCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]