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The map label for this gene is exbD [H]

Identifier: 15887517

GI number: 15887517

Start: 167771

End: 168274

Strand: Direct

Name: exbD [H]

Synonym: Atu0162

Alternate gene names: 15887517

Gene position: 167771-168274 (Clockwise)

Preceding gene: 15887516

Following gene: 15887518

Centisome position: 5.9

GC content: 60.52

Gene sequence:

>504_bases
ATGGCTGGCGGTATTCGCGAAAATAGCGGAGACGATCTCTCCGAGAACCACGAAATCAACGTCACGCCCTTTATCGACGT
GATGCTGGTTCTGCTCATCATCTTCATGGTGGCCGCACCGCTGGCGACCGTCGACGTGAATGTGGATCTGCCCGCATCTA
CTGCGAAGCCGGCGGAGCGCCCGGAGGAGCCGCTTTATCTGACGGTCAAGGACGATCTCTCGCTCAATCTCGGCAATGAT
GCGGTTGCCCGCGAGGCTCTTGCGGCAGCGATAGACCGCCAGACGGGTGGCAAGAAGGATACGCGCATCTTCCTGCGGGC
CGACAAGGCCGTTGATTACGGTCACTTCATGGAAATCATGAACCTCCTGCGGGATGCCGGTTATCTGAAAATCGCCCTTG
TCGGGTTGGAAAACGCAGCGGCGGTGTCTCAGCCTGCTGGTTCCACGACGGCACAACCCTCCGGTCAGCCCGCCGCGCCG
GCGGGGCAGGGAACAGCACCATGA

Upstream 100 bases:

>100_bases
CGGCGTGGAGCGCCTCGTCAGCCGCGACCTCGATTTTCGCCGCATTCCGCCCGGCAGCACCAGCAAGCCTGCCGTGTCGC
TGGTTGGACGGTGATCGGTC

Downstream 100 bases:

>100_bases
CTGAAAACGGCTTCCCGCAGGCCCGCCATTCCCGTCTTGGGGAAGTGACGCTGTGGTCTGCCGCGGCGCTGCTCATGCTG
AGTGTTCATGCCGGTTTTGC

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAERPEEPLYLTVKDDLSLNLGND
AVAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEIMNLLRDAGYLKIALVGLENAAAVSQPAGSTTAQPSGQPAAP
AGQGTAP

Sequences:

>Translated_167_residues
MAGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAERPEEPLYLTVKDDLSLNLGND
AVAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEIMNLLRDAGYLKIALVGLENAAAVSQPAGSTTAQPSGQPAAP
AGQGTAP
>Mature_166_residues
AGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAERPEEPLYLTVKDDLSLNLGNDA
VAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEIMNLLRDAGYLKIALVGLENAAAVSQPAGSTTAQPSGQPAAPA
GQGTAP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=63.1205673758865, Blast_Score=169, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 17523; Mature: 17392

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAER
CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
PEEPLYLTVKDDLSLNLGNDAVAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEIM
CCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
NLLRDAGYLKIALVGLENAAAVSQPAGSTTAQPSGQPAAPAGQGTAP
HHHHCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPASTAKPAER
CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
PEEPLYLTVKDDLSLNLGNDAVAREALAAAIDRQTGGKKDTRIFLRADKAVDYGHFMEIM
CCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
NLLRDAGYLKIALVGLENAAAVSQPAGSTTAQPSGQPAAPAGQGTAP
HHHHCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]