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The map label for this gene is drm

Identifier: 15887492

GI number: 15887492

Start: 140293

End: 141513

Strand: Reverse

Name: drm

Synonym: Atu0137

Alternate gene names: 15887492

Gene position: 141513-140293 (Counterclockwise)

Preceding gene: 159184176

Following gene: 15887491

Centisome position: 4.98

GC content: 61.1

Gene sequence:

>1221_bases
ATGGCAAGAGCATTTCTTCTCGTTCTGGATTCCTTCGGTGTCGGCGGTGCGCCTGACGCAGAGCGTTATGGCGATCTTGG
TGCAAATACGCTCGGTCATATCGCGGAATTCTGCGCGGCAGGGGCGGCGGATAGAGCCGGGCTTCGGGCCGGTCCGCTGA
AGCTGCCGAACATGTGTTCGCTAGGTCTCCTGGAGATCGCAAGGCAGGCAAGCGGCGACATTCCCGCCGGCATGGAACCG
CCGGAGCGGATTTTTGGCCTGCATGGCTCAGCCAGCGAAATCTCCAAGGGCAAGGACACGCCTTCGGGCCATTGGGAGAT
CGCCGGAACGCCGGTGACCTTCGACTGGGGTTATTTCCCGACGGAGGGCGACGCCTTTTCACCGGAGCTGGTTGAGGCGA
TCTGCAGGCAAGCCGATATTCCCGGCATCCTCGGCAATTGCCATGCTTCCGGTACCGAGATCATCGCTGCGCTCGGTGAA
GAACATATCCGGAGCGGCAAGCCGATCTGCTACACCTCTTCCGATTCCGTGTTCCAGATTGCCGCGCATGAAACCCACTT
TGGTCTGGATCGGCTTATCGCGCTCTGCGAGACGGTGCGCAAACTGCTCGATCCCCTGAATATCGGTCGTGTGATCGCCC
GCCCCTTCATCGGCGAGACGGTCGCCACCTTCGAACGCACCGGCAACCGCCGGGACTTCTCCGTCCCGCCGCCGGAGCCG
ACCCTGCTCGACCGGCTGGTGGAGGCGGGCCGCAAGGTGCATGCCATCGGCAAGATCGGCGACATCTATGCCCATCAGGG
TGTGACGCGCGTCATCAAGGCAAATGGCAACGCCGCCTTGATGGATGCGACGCTGCATGCCATTGACGAGGCTGAAAACG
GCGATCTCGTCTTCACCAATTTCGTCGATTTCGACATGCTTTACGGCCACCGCCGAGACGTTGCCGGTTATGCGGCGGCG
CTTGAGGCCTTCGATGCGCGTATTCCGGAAATCCACCGCAAGATGGCACCTGGCGATATAGCGCTTCTCACCGCCGACCA
TGGTTGCGATCCCACCTGGCGGGGCACGGACCATACGCGCGAAAGGGTGCCGATCATGGCATTCGGGCCAGGCATCCGTT
CCCGCGATGTCGGTATTCGTTCAAGCTACGCCGATATTGGCGAAAGTATCGCCCACCATCTTGGCATAGAGGCCGGTTCA
CACGGCAGGAGCTTCATTTGA

Upstream 100 bases:

>100_bases
GGATGGTTCATAAAAGCGCTTCCTTCTTCACGTTTTGCTGATCTATAACGACAGTTCGGCCTGACATTGCCCCGTCGGCG
CAATTTTGTTTCGGTGAGCT

Downstream 100 bases:

>100_bases
CATCGCATTTGCTGAAAGCGGAAATTCACTGCCACCTCGAAGGTGCAGCACCCCCCGCCCTCGTTGTGAAACAGGCGGAG
AAATACGGCATAGACACCAG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MARAFLLVLDSFGVGGAPDAERYGDLGANTLGHIAEFCAAGAADRAGLRAGPLKLPNMCSLGLLEIARQASGDIPAGMEP
PERIFGLHGSASEISKGKDTPSGHWEIAGTPVTFDWGYFPTEGDAFSPELVEAICRQADIPGILGNCHASGTEIIAALGE
EHIRSGKPICYTSSDSVFQIAAHETHFGLDRLIALCETVRKLLDPLNIGRVIARPFIGETVATFERTGNRRDFSVPPPEP
TLLDRLVEAGRKVHAIGKIGDIYAHQGVTRVIKANGNAALMDATLHAIDEAENGDLVFTNFVDFDMLYGHRRDVAGYAAA
LEAFDARIPEIHRKMAPGDIALLTADHGCDPTWRGTDHTRERVPIMAFGPGIRSRDVGIRSSYADIGESIAHHLGIEAGS
HGRSFI

Sequences:

>Translated_406_residues
MARAFLLVLDSFGVGGAPDAERYGDLGANTLGHIAEFCAAGAADRAGLRAGPLKLPNMCSLGLLEIARQASGDIPAGMEP
PERIFGLHGSASEISKGKDTPSGHWEIAGTPVTFDWGYFPTEGDAFSPELVEAICRQADIPGILGNCHASGTEIIAALGE
EHIRSGKPICYTSSDSVFQIAAHETHFGLDRLIALCETVRKLLDPLNIGRVIARPFIGETVATFERTGNRRDFSVPPPEP
TLLDRLVEAGRKVHAIGKIGDIYAHQGVTRVIKANGNAALMDATLHAIDEAENGDLVFTNFVDFDMLYGHRRDVAGYAAA
LEAFDARIPEIHRKMAPGDIALLTADHGCDPTWRGTDHTRERVPIMAFGPGIRSRDVGIRSSYADIGESIAHHLGIEAGS
HGRSFI
>Mature_405_residues
ARAFLLVLDSFGVGGAPDAERYGDLGANTLGHIAEFCAAGAADRAGLRAGPLKLPNMCSLGLLEIARQASGDIPAGMEPP
ERIFGLHGSASEISKGKDTPSGHWEIAGTPVTFDWGYFPTEGDAFSPELVEAICRQADIPGILGNCHASGTEIIAALGEE
HIRSGKPICYTSSDSVFQIAAHETHFGLDRLIALCETVRKLLDPLNIGRVIARPFIGETVATFERTGNRRDFSVPPPEPT
LLDRLVEAGRKVHAIGKIGDIYAHQGVTRVIKANGNAALMDATLHAIDEAENGDLVFTNFVDFDMLYGHRRDVAGYAAAL
EAFDARIPEIHRKMAPGDIALLTADHGCDPTWRGTDHTRERVPIMAFGPGIRSRDVGIRSSYADIGESIAHHLGIEAGSH
GRSFI

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=409, Percent_Identity=54.7677261613692, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1789781, Length=426, Percent_Identity=29.81220657277, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_AGRT5 (Q8UJ04)

Other databases:

- EMBL:   AE007869
- PIR:   AC2593
- PIR:   E97375
- RefSeq:   NP_353173.1
- ProteinModelPortal:   Q8UJ04
- SMR:   Q8UJ04
- STRING:   Q8UJ04
- GeneID:   1132175
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0137
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   Q8UJ04
- ProtClustDB:   PRK05362
- BioCyc:   ATUM176299-1:ATU0137-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 43458; Mature: 43326

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFLLVLDSFGVGGAPDAERYGDLGANTLGHIAEFCAAGAADRAGLRAGPLKLPNMCS
CCCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
LGLLEIARQASGDIPAGMEPPERIFGLHGSASEISKGKDTPSGHWEIAGTPVTFDWGYFP
HHHHHHHHHHCCCCCCCCCCHHHHEECCCCHHHHHCCCCCCCCCEEEECCEEEECCCCCC
TEGDAFSPELVEAICRQADIPGILGNCHASGTEIIAALGEEHIRSGKPICYTSSDSVFQI
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
AAHETHFGLDRLIALCETVRKLLDPLNIGRVIARPFIGETVATFERTGNRRDFSVPPPEP
EECCHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
TLLDRLVEAGRKVHAIGKIGDIYAHQGVTRVIKANGNAALMDATLHAIDEAENGDLVFTN
HHHHHHHHCCCEEEEHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHCCCCCCEEEEE
FVDFDMLYGHRRDVAGYAAALEAFDARIPEIHRKMAPGDIALLTADHGCDPTWRGTDHTR
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPIMAFGPGIRSRDVGIRSSYADIGESIAHHLGIEAGSHGRSFI
HCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ARAFLLVLDSFGVGGAPDAERYGDLGANTLGHIAEFCAAGAADRAGLRAGPLKLPNMCS
CCEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
LGLLEIARQASGDIPAGMEPPERIFGLHGSASEISKGKDTPSGHWEIAGTPVTFDWGYFP
HHHHHHHHHHCCCCCCCCCCHHHHEECCCCHHHHHCCCCCCCCCEEEECCEEEECCCCCC
TEGDAFSPELVEAICRQADIPGILGNCHASGTEIIAALGEEHIRSGKPICYTSSDSVFQI
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
AAHETHFGLDRLIALCETVRKLLDPLNIGRVIARPFIGETVATFERTGNRRDFSVPPPEP
EECCHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
TLLDRLVEAGRKVHAIGKIGDIYAHQGVTRVIKANGNAALMDATLHAIDEAENGDLVFTN
HHHHHHHHCCCEEEEHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHCCCCCCEEEEE
FVDFDMLYGHRRDVAGYAAALEAFDARIPEIHRKMAPGDIALLTADHGCDPTWRGTDHTR
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPIMAFGPGIRSRDVGIRSSYADIGESIAHHLGIEAGSHGRSFI
HCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194