Definition | Azorhizobium caulinodans ORS 571, complete genome. |
---|---|
Accession | NC_009937 |
Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is comEC [H]
Identifier: 158423824
GI number: 158423824
Start: 2513450
End: 2516299
Strand: Direct
Name: comEC [H]
Synonym: AZC_2200
Alternate gene names: 158423824
Gene position: 2513450-2516299 (Clockwise)
Preceding gene: 158423821
Following gene: 158423834
Centisome position: 46.81
GC content: 71.58
Gene sequence:
>2850_bases ATGGGGGACGGTCGGGCAGGGGCGCGGGGCCGCCCCGCCGAAGCACGCGCGGGCGTGCTCGGCGGCGCGGTCGCGCGCCC GGTCTTCATCCCCGCCCCCGTGTGGCCAGGTGCCCTCCTCGGCCGCCTGCGCGACCGCCTGTGGGCCGACATCCGTGCCG AGGCGGCTTCCGGCCGGCTGGTCCTCTGGCTGCCGGTTGGCTTCGGCTGCGGCATCCTTCTCTATTTCGGCGCGGCGGAG GAGCCGTCGCTGGCGGCTGTCCTCGGTCTTGCCAGCGGCCTCGCAGTCGCAAGCGTTTGTGCGCGGGCGCGGCCCGTGGC CTTCGCGCTGCTGCTGTGGCTAACCGCGGTCGGATGCGGTTTCGCCCTCGCCACCGCCCACACCGCATGGATCGCGCACC CGGTGCTCCTGCCGCCGCAGACACCGGTGCGCCTCTCCGGTTTCGTGGAGCAGGTGGAGCGCCGGGCGAAGGCGGATCGC ATTCTGCTGCGGGTGACGACAGCCGAGGGCAAGGGGCTTGCGGTGAAGCCGCAGCTCGTGCGGCTCTCGGTGGCGCGGGG CAGCGCACCGGCGGCCGGCACGCCGGTCTCCGTTCTGGCCCGCCTGCTGCCGCCCATGGAGGCGGCGCTCCCGGGAGGAT ATGACTTCGGCCGCAATATCTGGTTCCGCGGCATTGATGCGGTGGGATTCGGGCTCGGTCGCCCGCGGATCATCGCGCTC GCCGAGCCAGCTCCCTTCAGCGTACGCGTGGGGCGCCTCGTGGACGAGGTGCGTCAGGCGGTCGGCGCGCGCATCCGCGC CGTGCTCAGCGGCACCGCCGCCGACATCGCCGTGGCGCTGGTCGTGGGTGACCGTGCTTCCATCTCTCCGCAGGTGGAAG AGAGCATGCGGGTCTCCGGCCTCACCCATGTGCTCTCCATCTCCGGCCTGCACATGGCCATGGTGGCGGGAACCCTCTTC TTTCTCGTGCGCGGCGGCCTTGCGGCCTTCCCCCCGCTGGCGCTGGGCTTTCCCATCAAGTCACTGGCGGCTGCGACCGC GCTCGCGGGAAGCGGTGTCTATCTCCTGCTCTCCGGGAATGACTGGCCGGCCCAGCGCTCCTTCTGGATGCTCGCCATCG TGCTGGTGGGCGTGATCGCGGGGCGAGCGGCGCTCACCTTGCGCACGGTGGCGGTAGCGGCGGTCCTGGTGCTGGCGCTC GGCCCCGAATCCTTGCTGGAGCCCGGCACGCAGATGTCTTTCGCCGCGACGCTGGCGCTGGTGGCGGCCTACGAGCAATG GACCGGCCTGCGCACCCGGCCGGCGGCCGGCCCGCTCGTGCTGCGGGCGCTGGCGCGCATGGGCCTGTTCGTGGCCGCCC TCTCCATGACCTCCGTGGTCGCCGGGGCGGCGACGGCGCCCTATGCGGCGCTGCATTTCCAGCGCCTCGGCATCATGGGC CTCCTCTCCAACCTCGCGGCCATGCCGGCGGTGGAGTTCCTCGTCATGCCCTTCGGCCTGCTCGGGGTCCTTCTCCTGCC GTTCGGCTGGGATTTCATCGCCTGGCCGGTGATGGGTCTCGGCATCGACATCATGGTGAAGGTGTCGGACGTGGTTGCGG CCCTGCCCGGTGCCGACATGCGCACCGATTGGGTGGGGGCGGGCACTGCCGCCTTTGCGACACTCGCTTTGCTGGCTCTC TGCCTGCTGCGGGGGCTTCTGCGCCTTGCCGCCGTGCCCTGCGTCGTCGCGGCGCTCCTGCTCCTGGGCGCGCCACCCCG GCCGGACGTGCTGATTGCCGCCAACGGCCAGACCGTTGCCGTGCGCGGGGGCGATGGGCGCCTGAGCATCGCGGGCGCGC GCAGTTCGCGGCTGGTGGCGGAGCAGTGGCTCAGCAAGGAAGCCGATCCGCGCACGGCGGAGGTGCCCGATCTGGCGCAG GGTTTTGCCTGCGATGCGCGCCGCTGTATGGCGCCGCTCCCGGACGGCACGAAGATCGTATTGGTTCGCAAGGCCGAGGC TCTTCCGGCCGCGTGCGGGGAAGCGAGCCTCGTGGTGACGGCGGAGGTCGCTTCGACCGAGAACATTTCGGCCTGCGCCG CCCGCCTGTTCACGCCGCAGGACATGAGCCGGACCGGGACGCTGGCGCTCTTTCATCGACCCAGGCAGGCGGCAGGGGAG CCGGGCACCCCGCATCGGGTTGCGGGTGTGCCCCAGCCGGCGAAGGGAGATGCCGCACCAGCGGCCGTGGAGCTGCCACA GGCTGCATCCGGCAACAGCGTGCAGGCGACAGCCGCGCCCGAGCTCCGTCCTGAAACGCCGTCCGAAACAGACGCTTCGT CTTCAGAGGTGAGACCCGCATCGGCGCAAGCCGAACCGGATGGTCCGCCGCCGGCCACGCGTCCGCGCCGCATGGCGGCC GATCACCGGGCCTCGCTCTGGCGCGATCAGCAGGCCCGCTGGGCCAAGGCGCGGGAGATAAGGGCGGCAAGGAACGGAGG CACCCGATCCGGGATGCGCCCGATGTCCTCAGCGCCGCCGATACCGCCGGTGGCAGATGCCGGGGCTCTCAGGCCCGCAA ATGTGGAGGAGGAGCCAACCGTGGGTAGGCAGACATCCATCGCGCCGTCAGCTCATCCGCACAGGCCCACGGACACAGCC CCTCGACAATCGGCGCGGAGCGCCATGACCCAAGCGCCTTCTCAGGCGCAAATCCGCCGGACCTTCGCTGTGCACTGGCG AACGGTTCCGACGCGCCCTGCCGGCGTTCAGCGGCCCTGGATGCCAATGCTCCCGGATCTGCCGATGCCCGTCGTCGATA CGGAGACAGCCGGTCGCCGAAGCGAGGACGATGCGCAGGAGGAACCCTGA
Upstream 100 bases:
>100_bases GACGCCCCTGTGAGGCCTGCCAGCAGGCCGACGCGCACGAAGCCGTGGCGCATGCGAGGCGCCCGTGTAGCATAGGCGCG GGAGCGAAGGAACACGGCCG
Downstream 100 bases:
>100_bases TGGTCCGCCCGTCGGACCGCTGCATCTCACTGTCCCAAAACAATCCGGCTCTCGGAAACCGCGCTTCCGAACGCGCCCTC AGTAGCGGCGGATGAGCCCC
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 949; Mature: 948
Protein sequence:
>949_residues MGDGRAGARGRPAEARAGVLGGAVARPVFIPAPVWPGALLGRLRDRLWADIRAEAASGRLVLWLPVGFGCGILLYFGAAE EPSLAAVLGLASGLAVASVCARARPVAFALLLWLTAVGCGFALATAHTAWIAHPVLLPPQTPVRLSGFVEQVERRAKADR ILLRVTTAEGKGLAVKPQLVRLSVARGSAPAAGTPVSVLARLLPPMEAALPGGYDFGRNIWFRGIDAVGFGLGRPRIIAL AEPAPFSVRVGRLVDEVRQAVGARIRAVLSGTAADIAVALVVGDRASISPQVEESMRVSGLTHVLSISGLHMAMVAGTLF FLVRGGLAAFPPLALGFPIKSLAAATALAGSGVYLLLSGNDWPAQRSFWMLAIVLVGVIAGRAALTLRTVAVAAVLVLAL GPESLLEPGTQMSFAATLALVAAYEQWTGLRTRPAAGPLVLRALARMGLFVAALSMTSVVAGAATAPYAALHFQRLGIMG LLSNLAAMPAVEFLVMPFGLLGVLLLPFGWDFIAWPVMGLGIDIMVKVSDVVAALPGADMRTDWVGAGTAAFATLALLAL CLLRGLLRLAAVPCVVAALLLLGAPPRPDVLIAANGQTVAVRGGDGRLSIAGARSSRLVAEQWLSKEADPRTAEVPDLAQ GFACDARRCMAPLPDGTKIVLVRKAEALPAACGEASLVVTAEVASTENISACAARLFTPQDMSRTGTLALFHRPRQAAGE PGTPHRVAGVPQPAKGDAAPAAVELPQAASGNSVQATAAPELRPETPSETDASSSEVRPASAQAEPDGPPPATRPRRMAA DHRASLWRDQQARWAKAREIRAARNGGTRSGMRPMSSAPPIPPVADAGALRPANVEEEPTVGRQTSIAPSAHPHRPTDTA PRQSARSAMTQAPSQAQIRRTFAVHWRTVPTRPAGVQRPWMPMLPDLPMPVVDTETAGRRSEDDAQEEP
Sequences:
>Translated_949_residues MGDGRAGARGRPAEARAGVLGGAVARPVFIPAPVWPGALLGRLRDRLWADIRAEAASGRLVLWLPVGFGCGILLYFGAAE EPSLAAVLGLASGLAVASVCARARPVAFALLLWLTAVGCGFALATAHTAWIAHPVLLPPQTPVRLSGFVEQVERRAKADR ILLRVTTAEGKGLAVKPQLVRLSVARGSAPAAGTPVSVLARLLPPMEAALPGGYDFGRNIWFRGIDAVGFGLGRPRIIAL AEPAPFSVRVGRLVDEVRQAVGARIRAVLSGTAADIAVALVVGDRASISPQVEESMRVSGLTHVLSISGLHMAMVAGTLF FLVRGGLAAFPPLALGFPIKSLAAATALAGSGVYLLLSGNDWPAQRSFWMLAIVLVGVIAGRAALTLRTVAVAAVLVLAL GPESLLEPGTQMSFAATLALVAAYEQWTGLRTRPAAGPLVLRALARMGLFVAALSMTSVVAGAATAPYAALHFQRLGIMG LLSNLAAMPAVEFLVMPFGLLGVLLLPFGWDFIAWPVMGLGIDIMVKVSDVVAALPGADMRTDWVGAGTAAFATLALLAL CLLRGLLRLAAVPCVVAALLLLGAPPRPDVLIAANGQTVAVRGGDGRLSIAGARSSRLVAEQWLSKEADPRTAEVPDLAQ GFACDARRCMAPLPDGTKIVLVRKAEALPAACGEASLVVTAEVASTENISACAARLFTPQDMSRTGTLALFHRPRQAAGE PGTPHRVAGVPQPAKGDAAPAAVELPQAASGNSVQATAAPELRPETPSETDASSSEVRPASAQAEPDGPPPATRPRRMAA DHRASLWRDQQARWAKAREIRAARNGGTRSGMRPMSSAPPIPPVADAGALRPANVEEEPTVGRQTSIAPSAHPHRPTDTA PRQSARSAMTQAPSQAQIRRTFAVHWRTVPTRPAGVQRPWMPMLPDLPMPVVDTETAGRRSEDDAQEEP >Mature_948_residues GDGRAGARGRPAEARAGVLGGAVARPVFIPAPVWPGALLGRLRDRLWADIRAEAASGRLVLWLPVGFGCGILLYFGAAEE PSLAAVLGLASGLAVASVCARARPVAFALLLWLTAVGCGFALATAHTAWIAHPVLLPPQTPVRLSGFVEQVERRAKADRI LLRVTTAEGKGLAVKPQLVRLSVARGSAPAAGTPVSVLARLLPPMEAALPGGYDFGRNIWFRGIDAVGFGLGRPRIIALA EPAPFSVRVGRLVDEVRQAVGARIRAVLSGTAADIAVALVVGDRASISPQVEESMRVSGLTHVLSISGLHMAMVAGTLFF LVRGGLAAFPPLALGFPIKSLAAATALAGSGVYLLLSGNDWPAQRSFWMLAIVLVGVIAGRAALTLRTVAVAAVLVLALG PESLLEPGTQMSFAATLALVAAYEQWTGLRTRPAAGPLVLRALARMGLFVAALSMTSVVAGAATAPYAALHFQRLGIMGL LSNLAAMPAVEFLVMPFGLLGVLLLPFGWDFIAWPVMGLGIDIMVKVSDVVAALPGADMRTDWVGAGTAAFATLALLALC LLRGLLRLAAVPCVVAALLLLGAPPRPDVLIAANGQTVAVRGGDGRLSIAGARSSRLVAEQWLSKEADPRTAEVPDLAQG FACDARRCMAPLPDGTKIVLVRKAEALPAACGEASLVVTAEVASTENISACAARLFTPQDMSRTGTLALFHRPRQAAGEP GTPHRVAGVPQPAKGDAAPAAVELPQAASGNSVQATAAPELRPETPSETDASSSEVRPASAQAEPDGPPPATRPRRMAAD HRASLWRDQQARWAKAREIRAARNGGTRSGMRPMSSAPPIPPVADAGALRPANVEEEPTVGRQTSIAPSAHPHRPTDTAP RQSARSAMTQAPSQAQIRRTFAVHWRTVPTRPAGVQRPWMPMLPDLPMPVVDTETAGRRSEDDAQEEP
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 98799; Mature: 98668
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGRAGARGRPAEARAGVLGGAVARPVFIPAPVWPGALLGRLRDRLWADIRAEAASGRL CCCCCCCCCCCCCHHHHCHHCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE VLWLPVGFGCGILLYFGAAEEPSLAAVLGLASGLAVASVCARARPVAFALLLWLTAVGCG EEEEECCCCCEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALATAHTAWIAHPVLLPPQTPVRLSGFVEQVERRAKADRILLRVTTAEGKGLAVKPQLV HHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCEEECCCEE RLSVARGSAPAAGTPVSVLARLLPPMEAALPGGYDFGRNIWFRGIDAVGFGLGRPRIIAL EEEECCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCEEEEE AEPAPFSVRVGRLVDEVRQAVGARIRAVLSGTAADIAVALVVGDRASISPQVEESMRVSG ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCHHHHHHHHHH LTHVLSISGLHMAMVAGTLFFLVRGGLAAFPPLALGFPIKSLAAATALAGSGVYLLLSGN HHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCHHHCCCHHHHHHHHHHCCCCEEEEEECC DWPAQRSFWMLAIVLVGVIAGRAALTLRTVAVAAVLVLALGPESLLEPGTQMSFAATLAL CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHH VAAYEQWTGLRTRPAAGPLVLRALARMGLFVAALSMTSVVAGAATAPYAALHFQRLGIMG HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LLSNLAAMPAVEFLVMPFGLLGVLLLPFGWDFIAWPVMGLGIDIMVKVSDVVAALPGADM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEHHHHHHHCCCCCC RTDWVGAGTAAFATLALLALCLLRGLLRLAAVPCVVAALLLLGAPPRPDVLIAANGQTVA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEE VRGGDGRLSIAGARSSRLVAEQWLSKEADPRTAEVPDLAQGFACDARRCMAPLPDGTKIV EECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCEEE LVRKAEALPAACGEASLVVTAEVASTENISACAARLFTPQDMSRTGTLALFHRPRQAAGE EEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHCCC PGTPHRVAGVPQPAKGDAAPAAVELPQAASGNSVQATAAPELRPETPSETDASSSEVRPA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC SAQAEPDGPPPATRPRRMAADHRASLWRDQQARWAKAREIRAARNGGTRSGMRPMSSAPP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC IPPVADAGALRPANVEEEPTVGRQTSIAPSAHPHRPTDTAPRQSARSAMTQAPSQAQIRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH TFAVHWRTVPTRPAGVQRPWMPMLPDLPMPVVDTETAGRRSEDDAQEEP HHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GDGRAGARGRPAEARAGVLGGAVARPVFIPAPVWPGALLGRLRDRLWADIRAEAASGRL CCCCCCCCCCCCHHHHCHHCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE VLWLPVGFGCGILLYFGAAEEPSLAAVLGLASGLAVASVCARARPVAFALLLWLTAVGCG EEEEECCCCCEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALATAHTAWIAHPVLLPPQTPVRLSGFVEQVERRAKADRILLRVTTAEGKGLAVKPQLV HHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCEEECCCEE RLSVARGSAPAAGTPVSVLARLLPPMEAALPGGYDFGRNIWFRGIDAVGFGLGRPRIIAL EEEECCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCEEEEE AEPAPFSVRVGRLVDEVRQAVGARIRAVLSGTAADIAVALVVGDRASISPQVEESMRVSG ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCHHHHHHHHHH LTHVLSISGLHMAMVAGTLFFLVRGGLAAFPPLALGFPIKSLAAATALAGSGVYLLLSGN HHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCHHHCCCHHHHHHHHHHCCCCEEEEEECC DWPAQRSFWMLAIVLVGVIAGRAALTLRTVAVAAVLVLALGPESLLEPGTQMSFAATLAL CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHH VAAYEQWTGLRTRPAAGPLVLRALARMGLFVAALSMTSVVAGAATAPYAALHFQRLGIMG HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LLSNLAAMPAVEFLVMPFGLLGVLLLPFGWDFIAWPVMGLGIDIMVKVSDVVAALPGADM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEHHHHHHHCCCCCC RTDWVGAGTAAFATLALLALCLLRGLLRLAAVPCVVAALLLLGAPPRPDVLIAANGQTVA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEE VRGGDGRLSIAGARSSRLVAEQWLSKEADPRTAEVPDLAQGFACDARRCMAPLPDGTKIV EECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCEEE LVRKAEALPAACGEASLVVTAEVASTENISACAARLFTPQDMSRTGTLALFHRPRQAAGE EEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHCCC PGTPHRVAGVPQPAKGDAAPAAVELPQAASGNSVQATAAPELRPETPSETDASSSEVRPA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC SAQAEPDGPPPATRPRRMAADHRASLWRDQQARWAKAREIRAARNGGTRSGMRPMSSAPP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC IPPVADAGALRPANVEEEPTVGRQTSIAPSAHPHRPTDTAPRQSARSAMTQAPSQAQIRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH TFAVHWRTVPTRPAGVQRPWMPMLPDLPMPVVDTETAGRRSEDDAQEEP HHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]