Definition | Azorhizobium caulinodans ORS 571, complete genome. |
---|---|
Accession | NC_009937 |
Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is braD [H]
Identifier: 158423383
GI number: 158423383
Start: 2010546
End: 2012357
Strand: Direct
Name: braD [H]
Synonym: AZC_1759
Alternate gene names: 158423383
Gene position: 2010546-2012357 (Clockwise)
Preceding gene: 158423382
Following gene: 158423384
Centisome position: 37.44
GC content: 69.15
Gene sequence:
>1812_bases TTGGGAAAAGCCCTCTCCCGCTTGCGGGGGAGGGAACCTGTCCGGAGCGGGGAGGGCGCACTCTTGTCTCTCCGCTTGAC TGACTGTCGCAGCGCCTTTCGCCGTTCGGCCAGCCCGACCCTTGAAGGTCGCAGAAGCGCCGGTGCCTTTGCCGCCCGCG CGCCGTGGGAAACGTCCCTGATGAGCCTGATCCGCCGCCTGCTGTCCGCCGCGCTGCTGCTCGCAGCCGCGCTTCTTCTC GCCTGGGCCGCGCCATCGGGCGTGCGCGCCCAGACCGCCGCCGGTGATCTTGCCCCGGCGCTCGCCAAGATTGCCGCCGA CAGCTATTCCGACACCGAGGCCGCCCTCGGGATGCTGGCCACCAGCACCAATCCGCAGGCCGCCGTCATCGTCGCGGCGA TCTCCGACAACCGCCTGCTGTTCGATCCGGCCTCCAAGGCCATCTATGTGCGCGCCAAGGATGGCAGCTTCACCGACGCG GCCACCGGCGCCGCGGTGAGCGCCGCGCCCGCCGGCCTCAAGCCCGTGCGCCTCAACAATCGCGTGCGTCGCGCCGCCGA CGCTGCTGCCGGCGCCCTCTCGCTGCTCAATCCCGATCCGGCCAAGCGGCTTGAGGCGGCGGCCGCTGTCTTCAAGTCGC GCGATGCAACCGCCCTTCCGACCCTGGATGCGGCGCTCGCCAAGGAAAGCGTCGCCAATGTGCGCGCCGCGCTGGAGCAG GCGCGCGCCGCCATCGTGCTCACCTCCGCCACCTCCGGCGAGGCCGATCGGCTCGCGGCTGTGAACCTCATCGCCGCGCG CGGGGATCAGGAGGCGCTGGCGCTGCTCGCCAACGTGCCCGCCGATGCGCCGGCCTCCGTGAAGGCGGCGGCGGCCAACG GCACGGCCAAGATCAATCGCTCGCTCGCCATGTGGAACGTGGCCCAGAACGTCTGGTACGGCCTCTCCCTCGGCTCCGTG CTGCTGCTGGCGGCCATCGGTCTTGCCATCACCTTCGGCGTGATGGGCGTCATTAACATGGCCCATGGCGAGATGGTGAT GCTCGGCGCCTACACCACCTATGTGGTGCAGGACATCATCCGCACCTCCTATCCCGGCCTCTTCGGCTGGTCGCTCGCCA TCGCCCTGCCGCTGGCCTTCCTGTTCACGGGCCTCGTGGGCATCATCATCGAGCGCACGGTCATCCGCTTCCTCTATGGC CGGGCCTTGGAGACCCTGCTCGCCACCTGGGGCATCTCGCTCATGCTGCAGCAGGCGGTGCGCAGCATCTTCGGCCCCAC CAACAAGGAAGTGGGCGCGCCGTCCTGGATGTCGGGCGCCTTCGACGTGGGGCAGCTGTCCATCACCTACAACCGGCTCT GGATCATCGTCTTCGCGCTGCTGGTCTTCTTCGCGCTGCTGGTGGTGCTCAAGCGCACCTCGCTCGGCCTCTATGTGCGC GCGGTGACGCAGAACCGGCGCATGGCGGCGGCCATGGGCATCCGCACCGGGCGCATCGATGCGCTCACTTTCGGCCTCGG ATCGGGCATCGCGGGCATCGCCGGCGTCGCCCTCTCGCAGATCGACAATGTGAGCCCGAACCTCGGGCAGGGCTACATCA TCGACAGCTTCATGGTGGTGGTGTTCGGCGGCGTGGGGAACCTCTGGGGCACGCTGGTGGGCGCGCTGACGCTCGGCGTC GCCAACAAGCTGCTGGAGCCCTTCGCGGGCGCGGTGCTCGGCAAGATCGCGCTCCTCGTCTTCATCATCCTCTTCATCCA GAAGCGCCCGCGCGGCCTGTTCGCGCTCAAGGGCCGGGCGGTGGAAGCGTGA
Upstream 100 bases:
>100_bases GGTGAAGTACAACTGCGGCAACTACGACACCACCAAGAACACCTGCCTCGGCGCCACCGCCGCCAAGTGAGCAGCAATGT GAGCTGAGGCGGCTCGGTCC
Downstream 100 bases:
>100_bases ACATCATGCGCGGCTCAGGCATTCTCGATCGCCGCGGGGCGATCTTCATCATCCTCGTGCTGGCGGCGGGCGTGCTGGTG CCGGCCGGCAATCTGCTGGC
Product: ABC transporter permease
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MGKALSRLRGREPVRSGEGALLSLRLTDCRSAFRRSASPTLEGRRSAGAFAARAPWETSLMSLIRRLLSAALLLAAALLL AWAAPSGVRAQTAAGDLAPALAKIAADSYSDTEAALGMLATSTNPQAAVIVAAISDNRLLFDPASKAIYVRAKDGSFTDA ATGAAVSAAPAGLKPVRLNNRVRRAADAAAGALSLLNPDPAKRLEAAAAVFKSRDATALPTLDAALAKESVANVRAALEQ ARAAIVLTSATSGEADRLAAVNLIAARGDQEALALLANVPADAPASVKAAAANGTAKINRSLAMWNVAQNVWYGLSLGSV LLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTYVVQDIIRTSYPGLFGWSLAIALPLAFLFTGLVGIIIERTVIRFLYG RALETLLATWGISLMLQQAVRSIFGPTNKEVGAPSWMSGAFDVGQLSITYNRLWIIVFALLVFFALLVVLKRTSLGLYVR AVTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGALTLGV ANKLLEPFAGAVLGKIALLVFIILFIQKRPRGLFALKGRAVEA
Sequences:
>Translated_603_residues MGKALSRLRGREPVRSGEGALLSLRLTDCRSAFRRSASPTLEGRRSAGAFAARAPWETSLMSLIRRLLSAALLLAAALLL AWAAPSGVRAQTAAGDLAPALAKIAADSYSDTEAALGMLATSTNPQAAVIVAAISDNRLLFDPASKAIYVRAKDGSFTDA ATGAAVSAAPAGLKPVRLNNRVRRAADAAAGALSLLNPDPAKRLEAAAAVFKSRDATALPTLDAALAKESVANVRAALEQ ARAAIVLTSATSGEADRLAAVNLIAARGDQEALALLANVPADAPASVKAAAANGTAKINRSLAMWNVAQNVWYGLSLGSV LLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTYVVQDIIRTSYPGLFGWSLAIALPLAFLFTGLVGIIIERTVIRFLYG RALETLLATWGISLMLQQAVRSIFGPTNKEVGAPSWMSGAFDVGQLSITYNRLWIIVFALLVFFALLVVLKRTSLGLYVR AVTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGALTLGV ANKLLEPFAGAVLGKIALLVFIILFIQKRPRGLFALKGRAVEA >Mature_602_residues GKALSRLRGREPVRSGEGALLSLRLTDCRSAFRRSASPTLEGRRSAGAFAARAPWETSLMSLIRRLLSAALLLAAALLLA WAAPSGVRAQTAAGDLAPALAKIAADSYSDTEAALGMLATSTNPQAAVIVAAISDNRLLFDPASKAIYVRAKDGSFTDAA TGAAVSAAPAGLKPVRLNNRVRRAADAAAGALSLLNPDPAKRLEAAAAVFKSRDATALPTLDAALAKESVANVRAALEQA RAAIVLTSATSGEADRLAAVNLIAARGDQEALALLANVPADAPASVKAAAANGTAKINRSLAMWNVAQNVWYGLSLGSVL LLAAIGLAITFGVMGVINMAHGEMVMLGAYTTYVVQDIIRTSYPGLFGWSLAIALPLAFLFTGLVGIIIERTVIRFLYGR ALETLLATWGISLMLQQAVRSIFGPTNKEVGAPSWMSGAFDVGQLSITYNRLWIIVFALLVFFALLVVLKRTSLGLYVRA VTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGALTLGVA NKLLEPFAGAVLGKIALLVFIILFIQKRPRGLFALKGRAVEA
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=304, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 62845; Mature: 62714
Theoretical pI: Translated: 11.00; Mature: 11.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKALSRLRGREPVRSGEGALLSLRLTDCRSAFRRSASPTLEGRRSAGAFAARAPWETSL CCHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH MSLIRRLLSAALLLAAALLLAWAAPSGVRAQTAAGDLAPALAKIAADSYSDTEAALGMLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHC TSTNPQAAVIVAAISDNRLLFDPASKAIYVRAKDGSFTDAATGAAVSAAPAGLKPVRLNN CCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHH RVRRAADAAAGALSLLNPDPAKRLEAAAAVFKSRDATALPTLDAALAKESVANVRAALEQ HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ARAAIVLTSATSGEADRLAAVNLIAARGDQEALALLANVPADAPASVKAAAANGTAKINR CCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHH SLAMWNVAQNVWYGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTYVVQDII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH RTSYPGLFGWSLAIALPLAFLFTGLVGIIIERTVIRFLYGRALETLLATWGISLMLQQAV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSIFGPTNKEVGAPSWMSGAFDVGQLSITYNRLWIIVFALLVFFALLVVLKRTSLGLYVR HHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE AVTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVV EECCCCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VFGGVGNLWGTLVGALTLGVANKLLEPFAGAVLGKIALLVFIILFIQKRPRGLFALKGRA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC VEA CCC >Mature Secondary Structure GKALSRLRGREPVRSGEGALLSLRLTDCRSAFRRSASPTLEGRRSAGAFAARAPWETSL CHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH MSLIRRLLSAALLLAAALLLAWAAPSGVRAQTAAGDLAPALAKIAADSYSDTEAALGMLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHC TSTNPQAAVIVAAISDNRLLFDPASKAIYVRAKDGSFTDAATGAAVSAAPAGLKPVRLNN CCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHH RVRRAADAAAGALSLLNPDPAKRLEAAAAVFKSRDATALPTLDAALAKESVANVRAALEQ HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ARAAIVLTSATSGEADRLAAVNLIAARGDQEALALLANVPADAPASVKAAAANGTAKINR CCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHH SLAMWNVAQNVWYGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTYVVQDII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH RTSYPGLFGWSLAIALPLAFLFTGLVGIIIERTVIRFLYGRALETLLATWGISLMLQQAV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSIFGPTNKEVGAPSWMSGAFDVGQLSITYNRLWIIVFALLVFFALLVVLKRTSLGLYVR HHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE AVTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVV EECCCCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VFGGVGNLWGTLVGALTLGVANKLLEPFAGAVLGKIALLVFIILFIQKRPRGLFALKGRA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC VEA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]