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The map label for this gene is ydcN [C]

Identifier: 158423127

GI number: 158423127

Start: 1705632

End: 1706381

Strand: Reverse

Name: ydcN [C]

Synonym: AZC_1503

Alternate gene names: 158423127

Gene position: 1706381-1705632 (Counterclockwise)

Preceding gene: 158423128

Following gene: 158423126

Centisome position: 31.78

GC content: 65.33

Gene sequence:

>750_bases
TTGGCACCGACGCGCGCAGCGGTATGTTCTGCATCTGATAGTTTGGTCATTCCGGCCCGAAAGGGAGGGAGGCCCAAGAA
GGACATGAGAGTGCCGGACCGCAGAAGCAAAGCCGCCAAGGACGAAACCGAGACAGCCTCCTACATCACGGGTTCCGGTG
CGCCCGCCGCCGGCGCGACCAGCCTCGAGCAGGCCCTCGGAATCCAAGTCCGCTCCATCCGGCGCCAGCTCGACCTCACC
GTCTCCGATCTCGCCAATGCGGCGGGAATCTCCGTGGGCATGCTCTCGAAGATCGAGAACGGGCAGATCTCCCCCTCCCT
CTCCACGCTCCAGTCCGTCGCGCGGGCGCTCAATGTGCCCATCACGGCGCTGTTCTCCACCTTCGAGGAGCGGCACGACT
GCTCCTATGTGAAGGCAGGCCAGGGCGTCGTCATCGAGCGCCGCGGCACGAAGGTCGGCCACCAGTACGAACTGCTGGGC
CACGGGCTCGGCGGCGACATCGTGGTGGAGCCCTATCTCATCACGCTCACGCAGGAAGCCGTGCCCTACACCAGCTTCCG
CCATGGCGGGGTGGAGTTCATCCACATGCTGTCCGGCGAGGTGGTCTATCGCCACGGCGACCGCACCTACCACCTGCGGC
CCGGCGATTCCCTCATGTTCGATTCCGCCGCCGCCCATGGGCCGGAGGAATTGATCACCCGCCCGATGACCTATCTCTCC
ATCATCGTCTACAGCCGGCAGGCGGAGTGA

Upstream 100 bases:

>100_bases
GGGGCCGCGGCCCGGTCTCCCGCCCCGTACCGGACACACACCGGACGGGGCGGGAGACGGAACGCTCCGCCGGGACCCAA
GGCAATTTTCAGGTTGATGA

Downstream 100 bases:

>100_bases
TTTTCTTCGTAGGAAAATAATATTCCCCCCATTGACGATTCCGGCGGCGCGACGTACCAAATCTCCATGGCCCCGAAGGG
CGATGGAGCAACGCCATGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Transcriptional Regulator With Cupin Domain; Epoxidase; Transcriptional Regulator Merr Family; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Protein LacI Family; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAPTRAAVCSASDSLVIPARKGGRPKKDMRVPDRRSKAAKDETETASYITGSGAPAAGATSLEQALGIQVRSIRRQLDLT
VSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALFSTFEERHDCSYVKAGQGVVIERRGTKVGHQYELLG
HGLGGDIVVEPYLITLTQEAVPYTSFRHGGVEFIHMLSGEVVYRHGDRTYHLRPGDSLMFDSAAAHGPEELITRPMTYLS
IIVYSRQAE

Sequences:

>Translated_249_residues
MAPTRAAVCSASDSLVIPARKGGRPKKDMRVPDRRSKAAKDETETASYITGSGAPAAGATSLEQALGIQVRSIRRQLDLT
VSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALFSTFEERHDCSYVKAGQGVVIERRGTKVGHQYELLG
HGLGGDIVVEPYLITLTQEAVPYTSFRHGGVEFIHMLSGEVVYRHGDRTYHLRPGDSLMFDSAAAHGPEELITRPMTYLS
IIVYSRQAE
>Mature_248_residues
APTRAAVCSASDSLVIPARKGGRPKKDMRVPDRRSKAAKDETETASYITGSGAPAAGATSLEQALGIQVRSIRRQLDLTV
SDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALFSTFEERHDCSYVKAGQGVVIERRGTKVGHQYELLGH
GLGGDIVVEPYLITLTQEAVPYTSFRHGGVEFIHMLSGEVVYRHGDRTYHLRPGDSLMFDSAAAHGPEELITRPMTYLSI
IVYSRQAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26837; Mature: 26706

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTRAAVCSASDSLVIPARKGGRPKKDMRVPDRRSKAAKDETETASYITGSGAPAAGAT
CCCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHEEECCCCCCCCHH
SLEQALGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVP
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
ITALFSTFEERHDCSYVKAGQGVVIERRGTKVGHQYELLGHGLGGDIVVEPYLITLTQEA
HHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCEEEEEECCCCCCEEECCEEEEEEHHH
VPYTSFRHGGVEFIHMLSGEVVYRHGDRTYHLRPGDSLMFDSAAAHGPEELITRPMTYLS
CCCCCCCCCCHHHHHHHCCEEEEEECCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH
IIVYSRQAE
HEEEECCCC
>Mature Secondary Structure 
APTRAAVCSASDSLVIPARKGGRPKKDMRVPDRRSKAAKDETETASYITGSGAPAAGAT
CCCCCHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHEEECCCCCCCCHH
SLEQALGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVP
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
ITALFSTFEERHDCSYVKAGQGVVIERRGTKVGHQYELLGHGLGGDIVVEPYLITLTQEA
HHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCEEEEEECCCCCCEEECCEEEEEEHHH
VPYTSFRHGGVEFIHMLSGEVVYRHGDRTYHLRPGDSLMFDSAAAHGPEELITRPMTYLS
CCCCCCCCCCHHHHHHHCCEEEEEECCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH
IIVYSRQAE
HEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA