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The map label for this gene is cspA [H]

Identifier: 158423022

GI number: 158423022

Start: 1590236

End: 1590445

Strand: Reverse

Name: cspA [H]

Synonym: AZC_1398

Alternate gene names: 158423022

Gene position: 1590445-1590236 (Counterclockwise)

Preceding gene: 158423023

Following gene: 158423021

Centisome position: 29.62

GC content: 58.1

Gene sequence:

>210_bases
ATGAACTTCGGTACTGTGAAGTGGTTCAACGCCACCAAGGGCTTCGGCTTCATTCAGCCTGACAACGGCGGATCGGATGT
GTTCGTTCACATCTCTGCCGTGGAGCGGGCCGGAATGCAGGGCCTCGCCGAGGGCCAGAAGCTCCAGTTCGAGATCATCC
GCGACAACAAGTCCGGCAAGAACTCGGCAGGTAATCTTCAGGCTGCGTGA

Upstream 100 bases:

>100_bases
CGCTGCTGACAGCGCCTGACGATCCTTCCCTTCAATTTCTATTCTTGCCTCACCTGCTTCGGCGGGCAAGGCGCCCATGC
GCGATTGAAAGGAAATCGTC

Downstream 100 bases:

>100_bases
TCCTTCATGCCATTGACCACGGATGTACTGGCAATGGCGTGATTCACCTGAAGAGCACACGGAAGGCTCCGTCCATGGGA
CGGGGCTTTTTGTGTTTCTA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MNFGTVKWFNATKGFGFIQPDNGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGKNSAGNLQAA

Sequences:

>Translated_69_residues
MNFGTVKWFNATKGFGFIQPDNGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGKNSAGNLQAA
>Mature_69_residues
MNFGTVKWFNATKGFGFIQPDNGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGKNSAGNLQAA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=53.8461538461538, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1789979, Length=49, Percent_Identity=63.265306122449, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1788126, Length=49, Percent_Identity=61.2244897959184, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI2367114, Length=49, Percent_Identity=57.1428571428571, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787839, Length=49, Percent_Identity=59.1836734693878, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1787107, Length=57, Percent_Identity=49.1228070175439, Blast_Score=63, Evalue=5e-12,
Organism=Escherichia coli, GI1787834, Length=49, Percent_Identity=53.0612244897959, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7402; Mature: 7402

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFGTVKWFNATKGFGFIQPDNGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGK
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
NSAGNLQAA
CCCCCEECC
>Mature Secondary Structure
MNFGTVKWFNATKGFGFIQPDNGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGK
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
NSAGNLQAA
CCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]