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Identifier: 15834872

GI number: 15834872

Start: 294718

End: 295236

Strand: Reverse

Name: Not Available

Synonym: TC0252

Alternate gene names: NA

Gene position: 295236-294718 (Counterclockwise)

Preceding gene: 15834873

Following gene: 15834871

Centisome position: 27.52

GC content: 37.76

Gene sequence:

>519_bases
ATGCGTTATTTAGCCTATCTACTTGATAAAATCTCTCGTTCTCATCCGCATCTGCATCCTCTTCCAGAGGATATGGAAGC
GTATTTTGAGAAATATATACCAAACAAAAATATTCCTCTGGATACTTATCAAAAAGTTTTCAAATTATCTTCAGAAGACC
TTGAACAGATTTACAAAGAAGGATACCATGCCTACCTTCAAGGAGAGTATGATGAAAGCTCTATGGCTTTCTACTGGTTG
GTTTTCTTTAATCCCTTCGTTTCTAAGTTTTGGTTTTCATTAGGAGCTTCTCTCCACATGCTCCAAAAATATCAACAAGC
CCTTCATGCCTATAGTGTAGCGGCATTCCTAAGGGAAAAAGATCCTTATCCTCATTACTATGCCTATGTCTGCTACACTC
TTCTCAACAATCCTGAAGAAGCTGAAAAAGCCCTAGATCTCGCATGGCAAAAAGCTAAGATAAGCTCTGCTTACAATGCT
TTAAAAGAAGAGATTTTAGCGATTAAATCGTACGCCTAA

Upstream 100 bases:

>100_bases
GGCTTCTCCAAGAAGTCTCTCAATGCCATCAAACAAGATCTAATGTTTTGAAACTCTTGAAGGAACTTATGGACACTTTT
GTCCACAACTTGCGTCCCTA

Downstream 100 bases:

>100_bases
AATAAGACCACAGAGGACTTACGTCATTATGTCATCCTGGTTTGCACAAGCAACAGACATCGTTCTTTCTCAATCACCTG
ATATTCCAGATGCCTCTACT

Product: type III secretion chaperone

Products: NA

Alternate protein names: Type III Secretion Chaperone; TPR Repeat-Containing Protein; Type III Secretion Chaperone Low Calcium Response Protein H; Chaperone SycD

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRYLAYLLDKISRSHPHLHPLPEDMEAYFEKYIPNKNIPLDTYQKVFKLSSEDLEQIYKEGYHAYLQGEYDESSMAFYWL
VFFNPFVSKFWFSLGASLHMLQKYQQALHAYSVAAFLREKDPYPHYYAYVCYTLLNNPEEAEKALDLAWQKAKISSAYNA
LKEEILAIKSYA

Sequences:

>Translated_172_residues
MRYLAYLLDKISRSHPHLHPLPEDMEAYFEKYIPNKNIPLDTYQKVFKLSSEDLEQIYKEGYHAYLQGEYDESSMAFYWL
VFFNPFVSKFWFSLGASLHMLQKYQQALHAYSVAAFLREKDPYPHYYAYVCYTLLNNPEEAEKALDLAWQKAKISSAYNA
LKEEILAIKSYA
>Mature_172_residues
MRYLAYLLDKISRSHPHLHPLPEDMEAYFEKYIPNKNIPLDTYQKVFKLSSEDLEQIYKEGYHAYLQGEYDESSMAFYWL
VFFNPFVSKFWFSLGASLHMLQKYQQALHAYSVAAFLREKDPYPHYYAYVCYTLLNNPEEAEKALDLAWQKAKISSAYNA
LKEEILAIKSYA

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20370; Mature: 20370

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLAYLLDKISRSHPHLHPLPEDMEAYFEKYIPNKNIPLDTYQKVFKLSSEDLEQIYKE
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHC
GYHAYLQGEYDESSMAFYWLVFFNPFVSKFWFSLGASLHMLQKYQQALHAYSVAAFLREK
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPYPHYYAYVCYTLLNNPEEAEKALDLAWQKAKISSAYNALKEEILAIKSYA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYLAYLLDKISRSHPHLHPLPEDMEAYFEKYIPNKNIPLDTYQKVFKLSSEDLEQIYKE
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHC
GYHAYLQGEYDESSMAFYWLVFFNPFVSKFWFSLGASLHMLQKYQQALHAYSVAAFLREK
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPYPHYYAYVCYTLLNNPEEAEKALDLAWQKAKISSAYNALKEEILAIKSYA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA