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The map label for this gene is yafC [H]

Identifier: 158340510

GI number: 158340510

Start: 58753

End: 59643

Strand: Reverse

Name: yafC [H]

Synonym: AM1_C0055

Alternate gene names: 158340510

Gene position: 59643-58753 (Counterclockwise)

Preceding gene: 158340515

Following gene: 158340507

Centisome position: 21.84

GC content: 49.61

Gene sequence:

>891_bases
TTGGAATCCCTAGAAATATTTCGAGCCGTTGTCGATGCCGGGAGCTTCACAGCAGCGGGAGGGGTTTTGAATAAAGACAA
GGCACATGTCAGTCGGGTTGTCAGCCGTTTGGAAAAACGCTTAGGCGTACAGTTGCTGAAGCGATCGACGCGGCGCTTGA
ACATTACTGAAATTGGTCGTGACTTCTACGAGCGGGCCTGTGGCATTTTGGCTGCTCTGGAAGAAACCGAAGCCAGCATT
GCCCATGCCCAAGGTGAACCTCGCGGTGTCTTGCGCGTCACGGCAGGCGCAGAGTTTGGGCCTATGCGAGTCAATTATTG
GATTGCTGAATATCTCAAGCGCTACCCTGAAGTGCGCGTGGAAGCAGATTTTTCTGATCGCATTGTGGATGTAATTCATG
AAGGCATTGATGTTGCAATTCGGGTCGGCCCTTTAGTGGATTCAGAGCTATCCGTTCGTCCCCTGGGTGAAATTCGTTAT
GGTCTCTATGCCAGTCCAGCCTATGCGCATACCAGAGGAGAGCCTAAGTCATTGAAAGCTTTGGCCCAGCATTCATTGAT
CATGTTTGCGCCACGAGGAAAGCCAGTGTGGCCAATGGTTCGGGGAAAAGAGCGAGAAGATGTAACGTTAGAAGCGTTGT
GTGTGATTAACAATAATTTGGCAGCCAGGGAACTCGCAGCAGATGGACTGGGTATTGCATTGCTACCCCATTTCCATGCT
GCACCGCAGCTTGCTCAAAAACGATTGACTCGGGTGCTAGAGGATTGGGAGAGAGTACCTGTATCGGTGTCAGCATTATT
CACCTCCAGTCGTTATATGACACCGAAGGTGAGAGCATTTGTAGATTTGGCTATCGTAGACTTCAAAAATTCGGATAGTA
ACCTTCAATAA

Upstream 100 bases:

>100_bases
AAAGGTATGTTTCAAACCTGTTTTGACTGTATCGAGTTCGCCTGGATTGATAAATACTGAAAATCTCAATAGACTGTTGA
TTATGAAGTCAACAATTGAT

Downstream 100 bases:

>100_bases
CTTGAGCTTTGTTGACACATTTATTGCAAGTTTTATGTCGGAAGCAAAGGTTTGACAGCCAACCAGAGAATAAAGATTTC
AACTTATCAGACATGCTTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRDFYERACGILAALEETEASI
AHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVEADFSDRIVDVIHEGIDVAIRVGPLVDSELSVRPLGEIRY
GLYASPAYAHTRGEPKSLKALAQHSLIMFAPRGKPVWPMVRGKEREDVTLEALCVINNNLAARELAADGLGIALLPHFHA
APQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVDLAIVDFKNSDSNLQ

Sequences:

>Translated_296_residues
MESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRDFYERACGILAALEETEASI
AHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVEADFSDRIVDVIHEGIDVAIRVGPLVDSELSVRPLGEIRY
GLYASPAYAHTRGEPKSLKALAQHSLIMFAPRGKPVWPMVRGKEREDVTLEALCVINNNLAARELAADGLGIALLPHFHA
APQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVDLAIVDFKNSDSNLQ
>Mature_296_residues
MESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRDFYERACGILAALEETEASI
AHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVEADFSDRIVDVIHEGIDVAIRVGPLVDSELSVRPLGEIRY
GLYASPAYAHTRGEPKSLKALAQHSLIMFAPRGKPVWPMVRGKEREDVTLEALCVINNNLAARELAADGLGIALLPHFHA
APQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVDLAIVDFKNSDSNLQ

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=34.0277777777778, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=26.4084507042254, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=29.2682926829268, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=29.4736842105263, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=26.7361111111111, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=27.681660899654, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787589, Length=257, Percent_Identity=28.0155642023346, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=26.9230769230769, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787601, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=158, Percent_Identity=27.2151898734177, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=28.9473684210526, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32869; Mature: 32869

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGR
CCHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DFYERACGILAALEETEASIAHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHCCCEEE
EADFSDRIVDVIHEGIDVAIRVGPLVDSELSVRPLGEIRYGLYASPAYAHTRGEPKSLKA
ECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCEECCCCHHCCCCCHHHHHH
LAQHSLIMFAPRGKPVWPMVRGKEREDVTLEALCVINNNLAARELAADGLGIALLPHFHA
HHHCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEECCCCCC
APQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVDLAIVDFKNSDSNLQ
CHHHHHHHHHHHHHHHHHCCEEEEHEEECCCCCCHHHHHHEEEEEEEECCCCCCCC
>Mature Secondary Structure
MESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGR
CCHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DFYERACGILAALEETEASIAHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHCCCEEE
EADFSDRIVDVIHEGIDVAIRVGPLVDSELSVRPLGEIRYGLYASPAYAHTRGEPKSLKA
ECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCEECCCCHHCCCCCHHHHHH
LAQHSLIMFAPRGKPVWPMVRGKEREDVTLEALCVINNNLAARELAADGLGIALLPHFHA
HHHCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEECCCCCC
APQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVDLAIVDFKNSDSNLQ
CHHHHHHHHHHHHHHHHHCCEEEEHEEECCCCCCHHHHHHEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]