Click here to switch to the map view.

The map label for this gene is ycaD [C]

Identifier: 157963446

GI number: 157963446

Start: 4424025

End: 4425194

Strand: Direct

Name: ycaD [C]

Synonym: Spea_3634

Alternate gene names: 157963446

Gene position: 4424025-4425194 (Clockwise)

Preceding gene: 157963445

Following gene: 157963447

Centisome position: 85.5

GC content: 44.62

Gene sequence:

>1170_bases
GTGGAAAATTCTGCCTACAAACCATATAAAAACAGTACGTTCGTACCTGTTGCTGGTTTATCATTTTTCGCAATTGCATC
TGGCTTCTTAATGAGTCTAATTCCACTGTCATTGGCATCATTTGGCATGGATAGCTCATTGGTCGCATGGTTAGCGAGCA
TCTTCTATTTAGGTATTTTAGTTGGCACAACTTGTATTCAAAATATCGTGGCTAAAGTTGGCCATCGATTTTCTTTAATC
TTGTTCTTAGCCATGCTAACTCTGACGATTGTTGCCATGCTTGTCATCCCTACGGCAACTGTGTGGTTAATTGCCCGCTT
TATTGCAGGCTTTGCCGTAGCTGGCGTATTTGTTGTGGTTGAATCATGGTTACTCATGGCCGATAGCGCTAAGCAAAGAG
CTAAGCGTTTAGGCTTATACATGACCTCACTTTACGGCGGCAGTGCACTAGGCCAGCTGGCGATTGGCCCCTTAGGCGTC
AATGGCAACACCCCTTTTTACTGGGTTATCGGCTTATTAATGTTAGCAATCTTGCCCCCTCTTTTAGTTAAAAAGGGTCA
GCCAGAGAGTATGGAACATCAGAAAATAAGCTTGCGTGAAGTTAAGAAAATTAGCCTGCCTGCGGTTATTGGCTGTTTAG
TGTCAGGCATGCTGTTAGGCCCGATTTATGGCCTAATGCCAAGCTATATTAATGGCCAGTTTGCCAGTAACGAGCGTACT
GCATTTTTAATGGCAATCATTATTCTAGGCGGCATGTTAGTGCAGCCTTTAGTGAGCTATTTATCGACTCGAATTAGCAA
AAGCTTATTGATGGCGCTATTTTGCTTACTCGGCACTATTGGTATCGTAGGGATTGCCGATGGCACCTCAGTGTCTTTTG
TTACCACTTGCTACTTCTTACTAGGCGCAAGTTGCTTTGCCCTTTACCCTATTGCGATTACCCTCGCCTGTGAGACGATG
GCATTAGAGAAGATAGTTGCCGCAACCGAACTAATGCTACTTAGCTATAGTGTCGGCTCAGTATTTGGCCCTGTGATTGC
AGAGCACAGCAGTACTTCGGCGCACTCGTTGATCACTTACTTAGCCGTAGTGTTAACGACTACGTCAATTTATATGCTAA
TTAAAAGCCTGCAAAATACCCGCAGTGGCCACACGCCTGCGATTGGCTAA

Upstream 100 bases:

>100_bases
GTATATAAATTAAACTTTACTTTCCATATTAAAAGCATAAAATCCGCATCCTCAAACCAACATTCAAACCTTAAAAAGTA
TCATTCTATAGGAGATAGAG

Downstream 100 bases:

>100_bases
CAGCCACTAACTAATACACAAAGCGCAGCGAAAGCTGCGCTTTTGCTATCTATCGCTATGTCAAAAAATCCCCACGTACT
ACAGGGGGCGATTTTTTAGT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGILVGTTCIQNIVAKVGHRFSLI
LFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVVESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGV
NGNTPFYWVIGLLMLAILPPLLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERT
AFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFLLGASCFALYPIAITLACETM
ALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITYLAVVLTTTSIYMLIKSLQNTRSGHTPAIG

Sequences:

>Translated_389_residues
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGILVGTTCIQNIVAKVGHRFSLI
LFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVVESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGV
NGNTPFYWVIGLLMLAILPPLLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERT
AFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFLLGASCFALYPIAITLACETM
ALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITYLAVVLTTTSIYMLIKSLQNTRSGHTPAIG
>Mature_389_residues
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGILVGTTCIQNIVAKVGHRFSLI
LFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVVESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGV
NGNTPFYWVIGLLMLAILPPLLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERT
AFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFLLGASCFALYPIAITLACETM
ALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITYLAVVLTTTSIYMLIKSLQNTRSGHTPAIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=366, Percent_Identity=30.6010928961749, Blast_Score=155, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41440; Mature: 41440

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGIL
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VGTTCIQNIVAKVGHRFSLILFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGVNGNTPFYWVIGLLMLAILPP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH
LGASCFALYPIAITLACETMALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LAVVLTTTSIYMLIKSLQNTRSGHTPAIG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGIL
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VGTTCIQNIVAKVGHRFSLILFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGVNGNTPFYWVIGLLMLAILPP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH
LGASCFALYPIAITLACETMALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LAVVLTTTSIYMLIKSLQNTRSGHTPAIG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA