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The map label for this gene is psd [H]

Identifier: 157963363

GI number: 157963363

Start: 4334347

End: 4335210

Strand: Direct

Name: psd [H]

Synonym: Spea_3549

Alternate gene names: 157963363

Gene position: 4334347-4335210 (Clockwise)

Preceding gene: 157963362

Following gene: 157963364

Centisome position: 83.76

GC content: 45.14

Gene sequence:

>864_bases
TTGGATAAGATCAAAATTGCCCTGCAATACATCATGCCAAAGCACTTACTCTCTCGTCTTGTAGGTAAGCTTGCAGCGGC
TCAGATGGGTTCTGTCACTACAGCCGCTATTAACTGGTTTATCAAACAATACAAGATTGATATGAGTGAAGCAGCTCAGT
CAGAGGCTACTGCTTACGCCAGCTTCAACGACTTTTTTACCCGTGCACTAAAACCTGGAATTCGTCCACTATGTGAAGAC
AATGACTATATTGTTCATCCCGTAGATGGTGCCGTCAGTCAGCTAGGTCCAATTAAAGAAGGCCGTATCTTTCAAGCCAA
AGGACATGATTATTCTTCACTTGCGCTACTAGGCGATCAAGCCGATGATGCTAAGCGTTTTGAGGGTGGTGATTTTGCCA
CCATTTACCTTGCGCCAAAGGACTATCATCGTATTCATATGCCGATTAAAGGCACCCTGTCTAAGATGACCTATGTTCCA
GGTGAACTCTTCTCTGTTAACCCGTTAACGGCAGAGAATGTACCAGGCCTATTTGCTCGCAACGAACGTGTTGTAGCAAT
TTTTGAGACAGAAATTGGCCCAATGGCAATGGTACTGGTCGGTGCAACAATCGTAGCTAGTATCGAAACGGTTTGGGCTG
GAACAGTAACACCACCAACAGGCAAGAAAGTATTCACTTGGGATTATCCAACTGAAGGTCCTAATGCTCTGACACTTGAG
AAAGGCGCCGAAATGGGTCGCTTTAAACTCGGTAGCACTGTTGTGATGTTATTCGCCAAAGATGCCCTCGATAAATTTGC
TGATGGAGTAGAACCAAAGAGCGTGACGCGTATGGGTCAAGCCTTTGCAAAAATCGAAGACTAA

Upstream 100 bases:

>100_bases
TTTTCCTGCGGCAATTTATGCCGTAACACAGTAAGCGGTTTGGTTTGATTGAAAATAGATAAGATTTCACCTCAGGTGAA
AAGATTAAAGGATATTGAAA

Downstream 100 bases:

>100_bases
TTTCTAAAGGCAGGCATGGACAATAAAAAAACAGGGCTGTTAGAACTACACTTTGCGGTACTACTTTTTGGTGGTACCGC
ACTATTCTCCAAGCTTATTC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDKIKIALQYIMPKHLLSRLVGKLAAAQMGSVTTAAINWFIKQYKIDMSEAAQSEATAYASFNDFFTRALKPGIRPLCED
NDYIVHPVDGAVSQLGPIKEGRIFQAKGHDYSSLALLGDQADDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTAENVPGLFARNERVVAIFETEIGPMAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPNALTLE
KGAEMGRFKLGSTVVMLFAKDALDKFADGVEPKSVTRMGQAFAKIED

Sequences:

>Translated_287_residues
MDKIKIALQYIMPKHLLSRLVGKLAAAQMGSVTTAAINWFIKQYKIDMSEAAQSEATAYASFNDFFTRALKPGIRPLCED
NDYIVHPVDGAVSQLGPIKEGRIFQAKGHDYSSLALLGDQADDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTAENVPGLFARNERVVAIFETEIGPMAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPNALTLE
KGAEMGRFKLGSTVVMLFAKDALDKFADGVEPKSVTRMGQAFAKIED
>Mature_287_residues
MDKIKIALQYIMPKHLLSRLVGKLAAAQMGSVTTAAINWFIKQYKIDMSEAAQSEATAYASFNDFFTRALKPGIRPLCED
NDYIVHPVDGAVSQLGPIKEGRIFQAKGHDYSSLALLGDQADDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTAENVPGLFARNERVVAIFETEIGPMAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPNALTLE
KGAEMGRFKLGSTVVMLFAKDALDKFADGVEPKSVTRMGQAFAKIED

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=30.718954248366, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=52.112676056338, Blast_Score=303, Evalue=1e-83,
Organism=Caenorhabditis elegans, GI71980840, Length=290, Percent_Identity=31.0344827586207, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71980843, Length=289, Percent_Identity=31.1418685121107, Blast_Score=123, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=229, Percent_Identity=27.5109170305677, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6324160, Length=163, Percent_Identity=36.8098159509202, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24649526, Length=311, Percent_Identity=31.8327974276527, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24649528, Length=311, Percent_Identity=31.8327974276527, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24649524, Length=311, Percent_Identity=31.8327974276527, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31359; Mature: 31359

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKIALQYIMPKHLLSRLVGKLAAAQMGSVTTAAINWFIKQYKIDMSEAAQSEATAYA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEH
SFNDFFTRALKPGIRPLCEDNDYIVHPVDGAVSQLGPIKEGRIFQAKGHDYSSLALLGDQ
HHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCEEEEECCC
ADDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTAENVPGLFAR
CCCHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEEECCCCCCCCCCCEEC
NERVVAIFETEIGPMAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPNALTLE
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCEEEEC
KGAEMGRFKLGSTVVMLFAKDALDKFADGVEPKSVTRMGQAFAKIED
CCCCCCCEECCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKIKIALQYIMPKHLLSRLVGKLAAAQMGSVTTAAINWFIKQYKIDMSEAAQSEATAYA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEH
SFNDFFTRALKPGIRPLCEDNDYIVHPVDGAVSQLGPIKEGRIFQAKGHDYSSLALLGDQ
HHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCEEEEECCC
ADDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTAENVPGLFAR
CCCHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEEECCCCCCCCCCCEEC
NERVVAIFETEIGPMAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPNALTLE
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCEEEEC
KGAEMGRFKLGSTVVMLFAKDALDKFADGVEPKSVTRMGQAFAKIED
CCCCCCCEECCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA