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The map label for this gene is exbD1 [H]

Identifier: 157963146

GI number: 157963146

Start: 4073873

End: 4074286

Strand: Direct

Name: exbD1 [H]

Synonym: Spea_3330

Alternate gene names: 157963146

Gene position: 4073873-4074286 (Clockwise)

Preceding gene: 157963145

Following gene: 157963147

Centisome position: 78.73

GC content: 46.38

Gene sequence:

>414_bases
ATGATCAGTGCAGGCAAGGATGAAAGTGCCCAGAGCTTTGGCTTAGATCTGACGCCGCTTATCGACATTATCTTTATTGT
ACTGGTGTTTTTATTGCTAACCGCTAACACCCAGCTACTGAGCTTACCGGTTGATGTGCCGACTGAAACCGACTCAAGCC
TAAGCGCGCTTTCCCAAGACCGTCATATTGGAATCAATGTGCTGCAGAGTGAGCCACACTGGGCTCTTGATGGCCAAAGT
TATAGCGACTTTAATGCCTTTGAAGCGGCATTTACTCAAGCTTTTAAGGCTAACCCAAAAGCTAAGGTAGTTATTGCCGC
CGACAAAACAGCCCCAGTACAGCCCTTAATGACAGTTTTAGCCGCCATGCAGCGCCAAAATATTACTAATACCCAAATTT
TGATGGAGCCCTAA

Upstream 100 bases:

>100_bases
CAAAAGCGGCTACCTGCAAAGAAGCTAGCTGCCAGTCTCAAGCTGCTGAGCTAAATAAAGAAGCCGAGCTAAATAAAACA
CCTTTGACAGGTTTGTCATC

Downstream 100 bases:

>100_bases
TCGACGCGAAATTAGTTACAACACGTTTACTACGGGTTGTTTACGAAAAGTTGTCTACGAAAAGCTTTAACCAGTGCTCT
ACACCATTTTTTAATTAATA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MISAGKDESAQSFGLDLTPLIDIIFIVLVFLLLTANTQLLSLPVDVPTETDSSLSALSQDRHIGINVLQSEPHWALDGQS
YSDFNAFEAAFTQAFKANPKAKVVIAADKTAPVQPLMTVLAAMQRQNITNTQILMEP

Sequences:

>Translated_137_residues
MISAGKDESAQSFGLDLTPLIDIIFIVLVFLLLTANTQLLSLPVDVPTETDSSLSALSQDRHIGINVLQSEPHWALDGQS
YSDFNAFEAAFTQAFKANPKAKVVIAADKTAPVQPLMTVLAAMQRQNITNTQILMEP
>Mature_137_residues
MISAGKDESAQSFGLDLTPLIDIIFIVLVFLLLTANTQLLSLPVDVPTETDSSLSALSQDRHIGINVLQSEPHWALDGQS
YSDFNAFEAAFTQAFKANPKAKVVIAADKTAPVQPLMTVLAAMQRQNITNTQILMEP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14856; Mature: 14856

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISAGKDESAQSFGLDLTPLIDIIFIVLVFLLLTANTQLLSLPVDVPTETDSSLSALSQD
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCC
RHIGINVLQSEPHWALDGQSYSDFNAFEAAFTQAFKANPKAKVVIAADKTAPVQPLMTVL
CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHH
AAMQRQNITNTQILMEP
HHHHHCCCCCCEEEECC
>Mature Secondary Structure
MISAGKDESAQSFGLDLTPLIDIIFIVLVFLLLTANTQLLSLPVDVPTETDSSLSALSQD
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCC
RHIGINVLQSEPHWALDGQSYSDFNAFEAAFTQAFKANPKAKVVIAADKTAPVQPLMTVL
CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHH
AAMQRQNITNTQILMEP
HHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]