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The map label for this gene is ydhC [H]

Identifier: 157963066

GI number: 157963066

Start: 3985774

End: 3986421

Strand: Direct

Name: ydhC [H]

Synonym: Spea_3249

Alternate gene names: 157963066

Gene position: 3985774-3986421 (Clockwise)

Preceding gene: 157963062

Following gene: 157963068

Centisome position: 77.03

GC content: 46.6

Gene sequence:

>648_bases
ATGATCATTAATGACGTAGCGAATAAATCTGAATTTGCATACGACCAACTCGAAAAAATGATTACTTTCAGGGAGCTTAA
GCCGGGTTCCATGGTCAGTGAGAAACAACTTTCAGAGCAACTCGGTGTTGGCCGAACGCCGGTTCGCGAAGCACTACAAC
GTTTATCCTACGAGCGAATGGTAGAAATCCATCCTAGGCGTGGCATTCAAATTCCACAGATCTCGTTAGAAAGCCAACTC
AAGATCTTAGAGGTGCGCAGAGATGTCGAAGCATTGTGTGCGCGTTTTGCTGCGACCCGAGCCTCCGAGTCAGAAAAGAT
CCGTATGACCAAGCTGGCTAATCAATTAGAAGCGAATGCCACCAAGCAAGATGACTTAGTCTATGCTCAGCTACTTAAGC
AGATCCATATCTTGTTAGTTCAGGTCTCTAATAATGAATATCTGCAATTGGCGATGGCGCCATTGCAAGGGCTATCGCGT
CGCTTCTGGTTCGCCTACAAGAATGAATCTAGCGATCTGGCCGATGCAGCGAATTTACATGCAACCATACTGCGTAAAAT
TGTTGCAGGTGATCCTGTTGCTGCCGTTGAAGCATCTTATGCGCTCAATGACTACCTCACTAACATGGCTCGGCGCACGA
TAAGCTAA

Upstream 100 bases:

>100_bases
ATCAGTTGTTGGGGGCTAATATATTCCTGTATCATGCAGCGAACAAGTGAAAGCTACAAAACCGTGATCTAGATTGCGAA
GATAGAAAAGGAGTGTGACG

Downstream 100 bases:

>100_bases
ATATAAACAGCCAATTCACTACTCGTTAAAGAGTGGTATTAAATAAGGTGGAGCCGCCACTGGCTCCACTTTGTTAACTA
GTGACACAGGGCTCAAGTAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIINDVANKSEFAYDQLEKMITFRELKPGSMVSEKQLSEQLGVGRTPVREALQRLSYERMVEIHPRRGIQIPQISLESQL
KILEVRRDVEALCARFAATRASESEKIRMTKLANQLEANATKQDDLVYAQLLKQIHILLVQVSNNEYLQLAMAPLQGLSR
RFWFAYKNESSDLADAANLHATILRKIVAGDPVAAVEASYALNDYLTNMARRTIS

Sequences:

>Translated_215_residues
MIINDVANKSEFAYDQLEKMITFRELKPGSMVSEKQLSEQLGVGRTPVREALQRLSYERMVEIHPRRGIQIPQISLESQL
KILEVRRDVEALCARFAATRASESEKIRMTKLANQLEANATKQDDLVYAQLLKQIHILLVQVSNNEYLQLAMAPLQGLSR
RFWFAYKNESSDLADAANLHATILRKIVAGDPVAAVEASYALNDYLTNMARRTIS
>Mature_215_residues
MIINDVANKSEFAYDQLEKMITFRELKPGSMVSEKQLSEQLGVGRTPVREALQRLSYERMVEIHPRRGIQIPQISLESQL
KILEVRRDVEALCARFAATRASESEKIRMTKLANQLEANATKQDDLVYAQLLKQIHILLVQVSNNEYLQLAMAPLQGLSR
RFWFAYKNESSDLADAANLHATILRKIVAGDPVAAVEASYALNDYLTNMARRTIS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24378; Mature: 24378

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINDVANKSEFAYDQLEKMITFRELKPGSMVSEKQLSEQLGVGRTPVREALQRLSYERM
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCHHHH
VEIHPRRGIQIPQISLESQLKILEVRRDVEALCARFAATRASESEKIRMTKLANQLEANA
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
TKQDDLVYAQLLKQIHILLVQVSNNEYLQLAMAPLQGLSRRFWFAYKNESSDLADAANLH
CCCHHHHHHHHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
ATILRKIVAGDPVAAVEASYALNDYLTNMARRTIS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIINDVANKSEFAYDQLEKMITFRELKPGSMVSEKQLSEQLGVGRTPVREALQRLSYERM
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCHHHH
VEIHPRRGIQIPQISLESQLKILEVRRDVEALCARFAATRASESEKIRMTKLANQLEANA
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
TKQDDLVYAQLLKQIHILLVQVSNNEYLQLAMAPLQGLSRRFWFAYKNESSDLADAANLH
CCCHHHHHHHHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
ATILRKIVAGDPVAAVEASYALNDYLTNMARRTIS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]