| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is dcp [H]
Identifier: 157962671
GI number: 157962671
Start: 3481063
End: 3483198
Strand: Direct
Name: dcp [H]
Synonym: Spea_2852
Alternate gene names: 157962671
Gene position: 3481063-3483198 (Clockwise)
Preceding gene: 157962666
Following gene: 157962675
Centisome position: 67.27
GC content: 48.69
Gene sequence:
>2136_bases ATGCATAAGACAATCATTGCTGCGGCCATTGCCGCCACCTTAGCCTTGAGTGGCTGCTCATCAACAGCTCCGTCTCAAAG TTCGTCGGTAGAGATGGTGCAAAGTCAAAACCCATTCCTTCAAGCAAGCAAGTTGCAATATGAGGCGCCAGACTTCACTC TGATAAAAGATGAGCATTTTCAGCCTGCACTAGAGCTTGGGATCAAAGAGCATTATCAAGAGATCTTAACCATAGCTAAC AACCCTAAGGCGGCAACGTTTGAAAACACCATTGTGGCGATGGAGAAAAGCGGCGAACTACTCAACCGTACCTCAAAAGT GTTCTACAACTTAACTGGATCGAACAGTAATCCAGAACTGCGCAAAATACAGGGCGAAATGGCCCCAAAAATGGCCGCCC ACTCAGATAATATCAATCTCAACCCTGCTCTATTTAAACGGATTGAGAGCCTCTATAAACAACGTGCGGATCTGAGCTTA TCAGCGGAAGAAAATCGCTTAGTCGAGGTTTACTACAAGCGCTTTGTTCGCGCTGGTGCCAAGCTCACAGAAGATCAAAA ACAGCAGATCCGAGTGCTCAATGAAGAGCAATCGACTCTGACCAATGAGTTTGCTCAGCGTTTAATGCGCCAGACAAAAG AGATTGCCGTCGTCGTCGACAGCAAGGAGCTACTAACTGGTTTGTCTGACAGCGCTATCCGCGCAGCAGCACAAGATGCA AAAGCAGCAGGCCATGAAGGTAAGTATCAACTTAATATTACCAATACCACTCGCCAACCCGTTTTGACTCAGTTACAAGA CCGGGAGTTGCGTCAACAGATCTGGCAAGCCTCTGCTAATCGTGGTCTTGAGGGTGATAATGAAACAGCCTCTTTAGTTG CTCGTCTAGCCCAACTGCGCGCCGAGCGAGCAGAGCTGCTTGGCTATGAAAACTGGGCCGAGTATCGCCTAGAGCCACAG ATGGCTAAGACCCCAGAAGCGGTTTATAAGATGTTTGGCTCTATGGTGCCAGCTGTTGTTAAGAACACGCAAAAAGAAGC CAGCGATATTCAAGCCATGATCGACAAAACTGGCGGCGATTTTGAGCTAGCACCTTGGGACTGGGCTTATTACGCCGAAT TAGTACGTAAAGAGAAGTTCGACCTAGATGAGAACGCCATCCGCCCCTATTTTGAATTTGACCGTGTACTTGAAGACGGC GTGTTCTTTACCCTCAAAGAGCTCTACGGCGTAACGCTAAAGCCACGCCCTGATCTGCCTGTTTACCATGAAGATGTGAA AGCCTACGAGATGTTTGATGAAGATGGTAGCAGCATGGCGATCTTCTATGCCGATTACTTCTCTCGTGAAGGCAAGCGAG GTGGTGCATGGATGAGCTCGTTCGTGACGCAGTCGGAGTTACTTAATAGCAAGCCCGTTGTCGTTAACGTGATGAACATT AAGAAGGCGCCAGCAGGCGAGCCAACTTTTGTCAGCTACGATGAAGTGACTACCATGTTCCATGAGATGGGCCACGGCAC CCACGGCATGTTCTCGAAAGTCGTTTATCCAACTCTTTCAGGTACCGCGGTTTCACGTGACTTTGTTGAGTTTCCATCAA CCTTCGAGGAAGATTGGGCTGCACATCCAAAAGTATTAGCCAACTATGCTAAGCACTATGAAACGGGTGAGCCTATCCCG CAGGAGCTACTCAGCAAGCTATTAAAATCGCGCAGCTTTAACCAAGGTTTCGACACCTTAGAGTATATGTCTGCCGCTCT TTTAGATCTTGAATGGCATACACTCAAGGCCGGTAGCCCACTGCAAGATGTTGCCAGCTTTGAGGCGGCAGCGCTTAAGA AGCACGGCGTCGATCTTGCTGCGGTTCCACCTCGCTATAAGTCGACCTACTTTGCCCACGCTTTCCCAGGTGGTTACTCT GCAAGCTACTACGCTTATATGTGGAGTGAAATCTTAGCGGCAGATGCCTTCGCCTACGTACAAACACAGGGCGGCTTAAA TCGCGAAATAGGTATGAAGTTTAGAAAGACCATTCGTGAAGTGGGCAACACCGTTGCGCCTATGGATGCCTATAAGGCTT TCAGAGGCCAAGAGCCAACAACCGATGCCTTGTTAGAGCGTCGTGGCTTAAACTAA
Upstream 100 bases:
>100_bases AAAACCATGCATCTGCGCACAAAATCAATCAAATTAAGACACGTTTAATACTCAAATATTAGATTAAAAGCACAATTATA ATAAAGGAAGTCAAAAATCT
Downstream 100 bases:
>100_bases GGCTAAGTCAGTTTATTGCTTGCCGATGTCATGATAAATGGCTCCCTTTAAAGGGAGCTTTTTTTATGGCTGAGCTAGAT AAATTCAGCCCACAAAAAAA
Product: peptidyl-dipeptidase Dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 711; Mature: 711
Protein sequence:
>711_residues MHKTIIAAAIAATLALSGCSSTAPSQSSSVEMVQSQNPFLQASKLQYEAPDFTLIKDEHFQPALELGIKEHYQEILTIAN NPKAATFENTIVAMEKSGELLNRTSKVFYNLTGSNSNPELRKIQGEMAPKMAAHSDNINLNPALFKRIESLYKQRADLSL SAEENRLVEVYYKRFVRAGAKLTEDQKQQIRVLNEEQSTLTNEFAQRLMRQTKEIAVVVDSKELLTGLSDSAIRAAAQDA KAAGHEGKYQLNITNTTRQPVLTQLQDRELRQQIWQASANRGLEGDNETASLVARLAQLRAERAELLGYENWAEYRLEPQ MAKTPEAVYKMFGSMVPAVVKNTQKEASDIQAMIDKTGGDFELAPWDWAYYAELVRKEKFDLDENAIRPYFEFDRVLEDG VFFTLKELYGVTLKPRPDLPVYHEDVKAYEMFDEDGSSMAIFYADYFSREGKRGGAWMSSFVTQSELLNSKPVVVNVMNI KKAPAGEPTFVSYDEVTTMFHEMGHGTHGMFSKVVYPTLSGTAVSRDFVEFPSTFEEDWAAHPKVLANYAKHYETGEPIP QELLSKLLKSRSFNQGFDTLEYMSAALLDLEWHTLKAGSPLQDVASFEAAALKKHGVDLAAVPPRYKSTYFAHAFPGGYS ASYYAYMWSEILAADAFAYVQTQGGLNREIGMKFRKTIREVGNTVAPMDAYKAFRGQEPTTDALLERRGLN
Sequences:
>Translated_711_residues MHKTIIAAAIAATLALSGCSSTAPSQSSSVEMVQSQNPFLQASKLQYEAPDFTLIKDEHFQPALELGIKEHYQEILTIAN NPKAATFENTIVAMEKSGELLNRTSKVFYNLTGSNSNPELRKIQGEMAPKMAAHSDNINLNPALFKRIESLYKQRADLSL SAEENRLVEVYYKRFVRAGAKLTEDQKQQIRVLNEEQSTLTNEFAQRLMRQTKEIAVVVDSKELLTGLSDSAIRAAAQDA KAAGHEGKYQLNITNTTRQPVLTQLQDRELRQQIWQASANRGLEGDNETASLVARLAQLRAERAELLGYENWAEYRLEPQ MAKTPEAVYKMFGSMVPAVVKNTQKEASDIQAMIDKTGGDFELAPWDWAYYAELVRKEKFDLDENAIRPYFEFDRVLEDG VFFTLKELYGVTLKPRPDLPVYHEDVKAYEMFDEDGSSMAIFYADYFSREGKRGGAWMSSFVTQSELLNSKPVVVNVMNI KKAPAGEPTFVSYDEVTTMFHEMGHGTHGMFSKVVYPTLSGTAVSRDFVEFPSTFEEDWAAHPKVLANYAKHYETGEPIP QELLSKLLKSRSFNQGFDTLEYMSAALLDLEWHTLKAGSPLQDVASFEAAALKKHGVDLAAVPPRYKSTYFAHAFPGGYS ASYYAYMWSEILAADAFAYVQTQGGLNREIGMKFRKTIREVGNTVAPMDAYKAFRGQEPTTDALLERRGLN >Mature_711_residues MHKTIIAAAIAATLALSGCSSTAPSQSSSVEMVQSQNPFLQASKLQYEAPDFTLIKDEHFQPALELGIKEHYQEILTIAN NPKAATFENTIVAMEKSGELLNRTSKVFYNLTGSNSNPELRKIQGEMAPKMAAHSDNINLNPALFKRIESLYKQRADLSL SAEENRLVEVYYKRFVRAGAKLTEDQKQQIRVLNEEQSTLTNEFAQRLMRQTKEIAVVVDSKELLTGLSDSAIRAAAQDA KAAGHEGKYQLNITNTTRQPVLTQLQDRELRQQIWQASANRGLEGDNETASLVARLAQLRAERAELLGYENWAEYRLEPQ MAKTPEAVYKMFGSMVPAVVKNTQKEASDIQAMIDKTGGDFELAPWDWAYYAELVRKEKFDLDENAIRPYFEFDRVLEDG VFFTLKELYGVTLKPRPDLPVYHEDVKAYEMFDEDGSSMAIFYADYFSREGKRGGAWMSSFVTQSELLNSKPVVVNVMNI KKAPAGEPTFVSYDEVTTMFHEMGHGTHGMFSKVVYPTLSGTAVSRDFVEFPSTFEEDWAAHPKVLANYAKHYETGEPIP QELLSKLLKSRSFNQGFDTLEYMSAALLDLEWHTLKAGSPLQDVASFEAAALKKHGVDLAAVPPRYKSTYFAHAFPGGYS ASYYAYMWSEILAADAFAYVQTQGGLNREIGMKFRKTIREVGNTVAPMDAYKAFRGQEPTTDALLERRGLN
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=606, Percent_Identity=28.7128712871287, Blast_Score=237, Evalue=4e-62, Organism=Homo sapiens, GI14149738, Length=611, Percent_Identity=29.2962356792144, Blast_Score=206, Evalue=6e-53, Organism=Homo sapiens, GI156105687, Length=628, Percent_Identity=23.8853503184713, Blast_Score=166, Evalue=7e-41, Organism=Escherichia coli, GI1787819, Length=678, Percent_Identity=44.9852507374631, Blast_Score=628, Evalue=0.0, Organism=Escherichia coli, GI1789913, Length=684, Percent_Identity=31.2865497076023, Blast_Score=349, Evalue=3e-97, Organism=Caenorhabditis elegans, GI32565901, Length=639, Percent_Identity=21.5962441314554, Blast_Score=94, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6319793, Length=675, Percent_Identity=26.6666666666667, Blast_Score=208, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6322715, Length=580, Percent_Identity=23.2758620689655, Blast_Score=131, Evalue=3e-31, Organism=Drosophila melanogaster, GI21356111, Length=577, Percent_Identity=21.6637781629116, Blast_Score=160, Evalue=3e-39, Organism=Drosophila melanogaster, GI20129717, Length=416, Percent_Identity=26.6826923076923, Blast_Score=145, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 79843; Mature: 79843
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKTIIAAAIAATLALSGCSSTAPSQSSSVEMVQSQNPFLQASKLQYEAPDFTLIKDEHF CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEHHCCEECCCCEEEECCCCC QPALELGIKEHYQEILTIANNPKAATFENTIVAMEKSGELLNRTSKVFYNLTGSNSNPEL CHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEECCCHHHHHHHHEEEEECCCCCCCHH RKIQGEMAPKMAAHSDNINLNPALFKRIESLYKQRADLSLSAEENRLVEVYYKRFVRAGA HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCC KLTEDQKQQIRVLNEEQSTLTNEFAQRLMRQTKEIAVVVDSKELLTGLSDSAIRAAAQDA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHCCCHHHHHHHHHHH KAAGHEGKYQLNITNTTRQPVLTQLQDRELRQQIWQASANRGLEGDNETASLVARLAQLR HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH AERAELLGYENWAEYRLEPQMAKTPEAVYKMFGSMVPAVVKNTQKEASDIQAMIDKTGGD HHHHHHCCCCCHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FELAPWDWAYYAELVRKEKFDLDENAIRPYFEFDRVLEDGVFFTLKELYGVTLKPRPDLP EEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC VYHEDVKAYEMFDEDGSSMAIFYADYFSREGKRGGAWMSSFVTQSELLNSKPVVVNVMNI CHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC KKAPAGEPTFVSYDEVTTMFHEMGHGTHGMFSKVVYPTLSGTAVSRDFVEFPSTFEEDWA CCCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC AHPKVLANYAKHYETGEPIPQELLSKLLKSRSFNQGFDTLEYMSAALLDLEWHTLKAGSP CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEECCCCC LQDVASFEAAALKKHGVDLAAVPPRYKSTYFAHAFPGGYSASYYAYMWSEILAADAFAYV HHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHE QTQGGLNREIGMKFRKTIREVGNTVAPMDAYKAFRGQEPTTDALLERRGLN ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCC >Mature Secondary Structure MHKTIIAAAIAATLALSGCSSTAPSQSSSVEMVQSQNPFLQASKLQYEAPDFTLIKDEHF CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEHHCCEECCCCEEEECCCCC QPALELGIKEHYQEILTIANNPKAATFENTIVAMEKSGELLNRTSKVFYNLTGSNSNPEL CHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEECCCHHHHHHHHEEEEECCCCCCCHH RKIQGEMAPKMAAHSDNINLNPALFKRIESLYKQRADLSLSAEENRLVEVYYKRFVRAGA HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCC KLTEDQKQQIRVLNEEQSTLTNEFAQRLMRQTKEIAVVVDSKELLTGLSDSAIRAAAQDA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHCCCHHHHHHHHHHH KAAGHEGKYQLNITNTTRQPVLTQLQDRELRQQIWQASANRGLEGDNETASLVARLAQLR HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH AERAELLGYENWAEYRLEPQMAKTPEAVYKMFGSMVPAVVKNTQKEASDIQAMIDKTGGD HHHHHHCCCCCHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FELAPWDWAYYAELVRKEKFDLDENAIRPYFEFDRVLEDGVFFTLKELYGVTLKPRPDLP EEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC VYHEDVKAYEMFDEDGSSMAIFYADYFSREGKRGGAWMSSFVTQSELLNSKPVVVNVMNI CHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC KKAPAGEPTFVSYDEVTTMFHEMGHGTHGMFSKVVYPTLSGTAVSRDFVEFPSTFEEDWA CCCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC AHPKVLANYAKHYETGEPIPQELLSKLLKSRSFNQGFDTLEYMSAALLDLEWHTLKAGSP CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEECCCCC LQDVASFEAAALKKHGVDLAAVPPRYKSTYFAHAFPGGYSASYYAYMWSEILAADAFAYV HHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHE QTQGGLNREIGMKFRKTIREVGNTVAPMDAYKAFRGQEPTTDALLERRGLN ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]